Browse Element(s) Details


Os.55287.1.S1_at

Description gb:AK107803.1
DB_XREF= gi:32993012
TID=Os.55287.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55287 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-E05, full insert sequence.
FL= gb:AK107803.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1518011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15150Os.50261.1.S1_at11/115+8570230..8576318Leucyl-tRNA synthetase, cytoplasmic, putative, expressed
LOC_Os05g15150Os.50261.1.S2_at10/115+8570230..8576318Leucyl-tRNA synthetase, cytoplasmic, putative, expressed
LOC_Os05g15160Os.48609.1.S1_s_at11/115+8579866..8589021Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os05g15160OsAffx.23696.1.S1_x_at1/115+8579866..8589021Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os05g15160OsAffx.988.1.S1_at1/115+8579866..8589021Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os05g15170NANA5+8592558..8593471Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g15180Os.55287.1.S1_at11/115+8595804..8597787expressed protein
LOC_Os05g15190OsAffx.26904.1.S1_at9/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.26904.1.S1_x_at9/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.29316.1.S1_x_at2/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.14776.1.S1_at1/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.20927.2.S1_at1/115+8598996..8602595hypothetical protein
LOC_Os05g15190OsAffx.14776.1.S1_x_at1/115+8598996..8602595hypothetical protein
LOC_Os05g15200NANA5+8606261..8608023Zinc knuckle family protein
LOC_Os05g15210NANA5+8609337..8611693retrotransposon protein, putative, unclassified
LOC_Os05g15220NANA5+8612544..8617644retrotransposon protein, putative, unclassified, expressed
LOC_Os05g15230Os.54939.1.S1_at11/115+8619474..8621547expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55287.1.S1_at--1013--4731Chr05:8596522..8596546 (25 bp)
GCTGTTGATCTGCTACCATTTCTAG
LOC_Os05g15180
Os.55287.1.S1_at--160--4331Chr05:8596507..8596531 (25 bp)
CCATTTCTAGACTTTGTTCGACGGA
LOC_Os05g15180
Os.55287.1.S1_at--512--6711Chr05:8596492..8596516 (25 bp)
GTTCGACGGAACAATCTGCAGATGG
LOC_Os05g15180
Os.55287.1.S1_at--533--5211Chr05:8596468..8596492 (25 bp)
GAATTCTTCTCTATTGGCTCAAACC
LOC_Os05g15180
Os.55287.1.S1_at--265--8311Chr05:8596338..8596477 (25 bp)
GGCTCAAACCGGTATTTGGTCACCT
LOC_Os05g15180
Os.55287.1.S1_at--394--10251Chr05:8596324..8596348 (25 bp)
TTTGGTCACCTCAATCCATGAACAC
LOC_Os05g15180
Os.55287.1.S1_at--243--3531Chr05:8596308..8596332 (25 bp)
CATGAACACTGGTTCTGTGCTCGTT
LOC_Os05g15180
Os.55287.1.S1_at--391--8691Chr05:8596293..8596317 (25 bp)
TGTGCTCGTTGCGTTAATGCAGTAC
LOC_Os05g15180
Os.55287.1.S1_at--574--711Chr05:8596079..8596103 (25 bp)
ATGATGGTTCTCTTGGTTCTGCTTC
LOC_Os05g15180
Os.55287.1.S1_at--304--531Chr05:8595873..8595897 (25 bp)
ATCGCTATTAGCTGTTTTCTGTAAG
LOC_Os05g15180
Os.55287.1.S1_at--298--131Chr05:8595816..8595840 (25 bp)
ATTAGGGCATATCTACTCGGTAGTC
LOC_Os05g15180
Target Sequence 
GCTGTTGATCTGCTACCATTTCTAGACTTTGTTCGACGGAACAATCTGCAGATGGAATTCTTCTCTATTGGCTCAAACCG
GTATTTGGTCACCTCAATCCATGAACACTGGTTCTGTGCTCGTTGCGTTAATGCAGTACAGCCAGAAGGTGAAGGTGTTA
TAGTTATGGAGATTGGAGCTTACTTGTTAGTTTGTATGATGGTTCTCTTGGTTCTGCTTCACAAGCAATGGTGGCTGTTG
ATCAGTTTGCATGGCACTTTAATCGAAGAACTCACTAACTGCTGATTTTTGTTAGTTTCAGGTGTGAGATCTGAGATGAG
TCTAGACATTGTTGATTGAAATCATTCTTCTAAACTTTAGTGTAACTGCCTAATATTACTGTTCTCTTGGGTTTAGTTGT
AATCGCTATTAGCTGTTTTCTGTAAGACAGATGTGTTTGAGGCAATTTAACTAAACTTATTAGGGCATATCTACTCGGTA
GTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis