Browse Element(s) Details


Os.55313.1.S1_at

Description gb:AK107847.1
DB_XREF= gi:32993056
TID=Os.55313.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55313 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-A05, full insert sequence.
FL= gb:AK107847.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g241301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24100NANA12+13704466..13708312retrotransposon protein, putative, unclassified
LOC_Os12g24110NANA12+13710442..13717175retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g24120NANA12+13720729..13723763retrotransposon protein, putative, unclassified
LOC_Os12g24130OsAffx.19794.1.S1_at10/1112+13732364..13735966hypothetical protein
LOC_Os12g24130Os.55313.1.S1_at1/1112+13732364..13735966hypothetical protein
LOC_Os12g24140OsAffx.31860.1.S1_at11/1112+13736781..13737740Protein kinase domain containing protein
LOC_Os12g24150OsAffx.7684.1.S1_at11/1112+13743785..13744213hypothetical protein
LOC_Os12g24160Os.49985.1.S1_at2/1112+13747297..13751274retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g24160OsAffx.17730.1.S1_at1/1112+13747297..13751274retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g24170Os.52193.1.S1_at11/1112+13758669..13761266Galactose binding lectin domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55313.1.S1_at--23--4791Chr11:4821810..4821834 (25 bp)
GCTGCCTCTTGGTGTGCTACTGCTG
NONE
Os.55313.1.S1_at--571--9912Chr11:8000816..8000840 (25 bp)
TACTGCTGCCAAATTCCTGTTGTTG
NONE
Os.55313.1.S1_at--106--9112Chr11:8000839..8000863 (25 bp)
TGCTGCTGCCGATCCGATCTTTTAA
NONE
Os.55313.1.S1_at--546--552Chr11:8000850..8000874 (25 bp)
ATCCGATCTTTTAATTGCCGCTGCT
NONE
Os.55313.1.S1_at--775--9172Chr11:8000865..8000889 (25 bp)
TGCCGCTGCTGCTAATGCATGGCTT
NONE
Os.55313.1.S1_at--39--3852Chr11:8000873..8000897 (25 bp)
CTGCTAATGCATGGCTTGATGCCTT
NONE
Os.55313.1.S1_at--251--7671Chr11:4822034..4822058 (25 bp)
GGGATTTCGGTCATTTTGCAACTAG
NONE
Os.55313.1.S1_at--898--5132Chr12:13732703..13732723 (21 bp)
GCAACTAGCGGGTTTGTTCTCAAAT
LOC_Os12g24130
Os.55313.1.S1_at--315--2251Chr11:4822072..4822096 (25 bp)
AAATTCTAGTATCCACGCTGCAGCG
NONE
Os.55313.1.S1_at--293--1831Chr11:4822086..4822110 (25 bp)
ACGCTGCAGCGGTACTTTTGGCTAC
NONE
Os.55313.1.S1_at--284--2031Chr11:4822099..4822123 (25 bp)
ACTTTTGGCTACTCCCTAGAAGTAT
NONE
Target Sequence 
GCTGCCTCTTGGTGTGCTACTGCTGCCAAATTCCTGTTGTTGCTGCTGCCGATCCGATCTTTTAATTGCCGCTGCTGCTA
ATGCATGGCTTGATGCCTTGATGTGCTGCGATCTGGTCTCTTCATCGCTGCTGCTGCTGACTGCTGCTGCTGCTGCTGAC
TGCTGCTGACTGCTGCTGTTAGGGAGGAGAAGGGCGCAGGAGAGCAGGAGGAAGAAGGAATTTGGGGATTTCGGTCATTT
TGCAACTAGCGGGTTTGTTCTCAAATTCTAGTATCCACGCTGCAGCGGTACTTTTGGCTACTCCCTAGAAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis