Browse Element(s) Details


Os.5533.1.S1_at

Description gb:AK103509.1
DB_XREF= gi:32988718
TID=Os.5533.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5533 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033131E21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033131E21, full insert sequence.
FL= gb:AK103509.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g304109/11PHD finger-like domain protein 5A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30360Os.47463.1.S1_x_at5/115+17523455..17524463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g30360Os.14491.2.S1_x_at4/115+17523455..17524463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g30370NANA5+17524650..17525681transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g30380NANA5+17529028..17532279transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g30390OsAffx.27083.1.S1_at11/115+17533724..17540517Glycosyl hydrolase family 1 protein
LOC_Os05g30400Os.10482.1.S1_at11/115+17540516..17542514expressed protein
LOC_Os05g30410Os.5533.1.S1_at9/115+17545795..17548104PHD finger-like domain protein 5A, putative, expressed
LOC_Os05g30420Os.55569.1.S1_at10/115+17550003..17552334expressed protein
LOC_Os05g30430Os.9888.1.S1_at11/115+17556799..17560313expressed protein
LOC_Os05g30440OsAffx.27084.1.S1_at11/115+17560522..17561175hypothetical protein
LOC_Os05g30454Os.55625.1.S1_at11/115+17563862..17568673Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os05g30454OsAffx.24949.2.S1_at4/115+17563862..17568673Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os05g30454OsAffx.9087.1.S1_at2/115+17563862..17568673Thiamin pyrophosphokinase, catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5533.1.S1_at--766--8491Chr05:17546323..17546347 (25 bp)
TGGCATTGCGATTGGTCGTTTATGT
LOC_Os05g30410
Os.5533.1.S1_at--975--8671Chr05:17546271..17546295 (25 bp)
TGTGACTCCTACGTGCGCCCGTGTA
LOC_Os05g30410
Os.5533.1.S1_at--890--3991Chr05:17546252..17546276 (25 bp)
CGTGTACGCTTGTTCGGGTCTGTGA
LOC_Os05g30410
Os.5533.1.S1_at--258--7811Chr05:17546005..17546029 (25 bp)
GGTCTCGCTGTGATTTTTGTTGCAC
LOC_Os05g30410
Os.5533.1.S1_at--401--10251Chr05:17545990..17546014 (25 bp)
TTTGTTGCACGGATATAACTGCTAA
LOC_Os05g30410
Os.5533.1.S1_at--166--1971Chr05:17545973..17545997 (25 bp)
ACTGCTAAGTCAACAGCTTTGTATT
LOC_Os05g30410
Os.5533.1.S1_at--164--4891Chr05:17545958..17545982 (25 bp)
GCTTTGTATTCATGGTCTGCTTTGA
LOC_Os05g30410
Os.5533.1.S1_at--506--6491Chr05:17545922..17545946 (25 bp)
GATAGCATCGCTGATGTTTGCTGTA
LOC_Os05g30410
Os.5533.1.S1_at--787--2971NONE
AATGGTCTACATTCTCGAGTCTGCA
NONE
Os.5533.1.S1_at--17--9891NONE
TACATTCTCGAGTCTGCATTTGCAC
NONE
Os.5533.1.S1_at--1077--9011Chr05:17545855..17545879 (25 bp)
TGCACTTATGCAGTAGGTACCTGAT
LOC_Os05g30410
Target Sequence 
TGGCATTGCGATTGGTCGTTTATGTGAGAAATGTGATGGCAAGTGTGTCATCTGTGACTCCTACGTGCGCCCGTGTACGC
TTGTTCGGGTCTGTGATGAGTGCAACTATGGNATCCTTCCAGGGAAGGTGTGTTATCTGTGGAGGGGTTNGCANTCTCAG
ATGCTTNACTACTNCAAGGAGTGCACTCAGCAANGAAAANGGACCNAGATGGATGTCCTAAGNATTGTCAACCTTGGAAG
CGCCAAGACCGATCTCTTCTATGAGCGCAAGAAATATGGTTTTAAGAAGAGATGATCAGGAAGGTGGATTTGTCTGGTCC
TTCTGGTCTCGCTGTGATTTTTGTTGCACGGATATAACTGCTAAGTCAACAGCTTTGTATTCATGGTCTGCTTTGATACT
AATATGAGATAGCATCGCTGATGTTTGCTGTAANNNNANNNNNANNAAATGGTCTACATTCTCGAGTCTGCATTTGCACT
TATGCAGTAGGTACCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis