Browse Element(s) Details


OsAffx.27083.1.S1_at

Description tigr:9633.m02757
TID=OsAffx.27083.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to beta-glucosidases
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3039011/11Glycosyl hydrolase family 1 protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30350Os.11830.1.S1_at11/115+17513995..17519526Glycosyl hydrolase family 1 protein, expressed
LOC_Os05g30360Os.47463.1.S1_x_at5/115+17523455..17524463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g30360Os.14491.2.S1_x_at4/115+17523455..17524463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g30370NANA5+17524650..17525681transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g30380NANA5+17529028..17532279transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g30390OsAffx.27083.1.S1_at11/115+17533724..17540517Glycosyl hydrolase family 1 protein
LOC_Os05g30400Os.10482.1.S1_at11/115+17540516..17542514expressed protein
LOC_Os05g30410Os.5533.1.S1_at9/115+17545795..17548104PHD finger-like domain protein 5A, putative, expressed
LOC_Os05g30420Os.55569.1.S1_at10/115+17550003..17552334expressed protein
LOC_Os05g30430Os.9888.1.S1_at11/115+17556799..17560313expressed protein
LOC_Os05g30440OsAffx.27084.1.S1_at11/115+17560522..17561175hypothetical protein
LOC_Os05g30454Os.55625.1.S1_at11/115+17563862..17568673Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os05g30454OsAffx.24949.2.S1_at4/115+17563862..17568673Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os05g30454OsAffx.9087.1.S1_at2/115+17563862..17568673Thiamin pyrophosphokinase, catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27083.1.S1_at--874--6051Chr05:17538548..17538572 (25 bp)
GAGTATTGGACTTCACGATTGGTTG
LOC_Os05g30390
OsAffx.27083.1.S1_at--1009--651Chr05:17538810..17538834 (25 bp)
ATGAAGAAGCAAGCCGGTTCCCGGA
LOC_Os05g30390
OsAffx.27083.1.S1_at--648--6111Chr05:17538875..17538899 (25 bp)
GAGTGCCGATTTCATTGGTATAAAC
LOC_Os05g30390
OsAffx.27083.1.S1_at--211--6771Chr05:17538918..17538942 (25 bp)
GTTAGCGATGGATCGAACCGCGAAA
LOC_Os05g30390
OsAffx.27083.1.S1_at--894--6491Chr05:17538969..17538990 (22 bp)
GATATGGCTGCACACTTCAGAGTTT
LOC_Os05g30390
OsAffx.27083.1.S1_at--719--9731Chr05:17539265..17539289 (25 bp)
TCAAGGAATGATACACCGAGCGATA
LOC_Os05g30390
OsAffx.27083.1.S1_at--838--6071Chr05:17539972..17539996 (25 bp)
GAGTAGCTACATGGGCGGCACATTA
LOC_Os05g30390
OsAffx.27083.1.S1_at--441--8651Chr05:17539983..17540007 (25 bp)
TGGGCGGCACATTAGCTGCACTAAG
LOC_Os05g30390
OsAffx.27083.1.S1_at--762--3591Chr05:17540130..17540154 (25 bp)
CATTCCTGGATGTGTTCGAGCTGTT
LOC_Os05g30390
OsAffx.27083.1.S1_at--350--3931Chr05:17540176..17540200 (25 bp)
CGGCCTGCACCATGTCGATTTTGAG
LOC_Os05g30390
OsAffx.27083.1.S1_at--598--1691Chr05:17540220..17540244 (25 bp)
AGCCAAAGCTCTCTGCTCAGTGGTA
LOC_Os05g30390
Target Sequence 
GAGTATTGGACTTCACGATTGGTTGGATACTGGACCCCTTGGTGTATGGAGACTACCCTGAAATCATGAAGAAGCAAGCC
GGTTCCCGGATTCCATCCTTCACAAAAGAACAATCTGAGTTGATCCGTGGGAGTGCCGATTTCATTGGTATAAACCATTA
CAAATCGTTGTATGTTAGCGATGGATCGAACCGCGAAAAGGCAGGACTTCGGGATTATAATGCTGATATGGCTGCACACT
TCAGAGTTTCAAGGAATGATACACCGAGCGATAAGTGTTTATCTATTTACCAAATTTTAGGTTTCGGGCAGTTCGATAAG
GAGGATTCACTGAATGACACCGAAAGAGTGGAGTACTTGAGTAGCTACATGGGCGGCACATTAGCTGCACTAAGGAATGG
AGCCAATGTGAAGGGTTACTTTGTGTGGTCATTCCTGGATGTGTTCGAGCTGTTCGCAGGATATCATTCGCCATTCGGCC
TGCACCATGTCGATTTTGAGGACCCCAGTTTGCCAAGGCAGCCAAAGCTCTCTGCTCAGTGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis