Browse Element(s) Details


Os.55368.1.S1_at

Description gb:AK107957.1
DB_XREF= gi:32993166
TID=Os.55368.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55368 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-C05, full insert sequence.
FL= gb:AK107957.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0529011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05260Os.53756.1.S1_at9/115+2562822..2568136DNA repair helicase UVH6, putative, expressed
LOC_Os05g05270Os.49091.1.S1_at11/115+2573518..2576476sucrose-phosphatase, putative, expressed
LOC_Os05g05280Os.53552.1.S1_at11/115+2576565..2582182zinc finger family protein, putative, expressed
LOC_Os05g05280Os.2852.1.S1_at1/115+2576565..2582182zinc finger family protein, putative, expressed
LOC_Os05g05290Os.55368.1.S1_at11/115+2583464..2584282expressed protein
LOC_Os05g05300NANA5+2587556..2590142group II intron splicing factor CRS1, putative, expressed
LOC_Os05g05310Os.5008.1.S1_at11/115+2589701..2595265Fibronectin type III domain containing protein, expressed
LOC_Os05g05310Os.5008.1.S2_at11/115+2589701..2595265Fibronectin type III domain containing protein, expressed
LOC_Os05g05320Os.10857.1.S1_at11/115+2596186..2602317expressed protein
LOC_Os05g05320OsAffx.27710.1.S1_at2/115+2596186..2602317expressed protein
LOC_Os05g05330Os.10713.1.S1_at7/115+2603989..2608259expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55368.1.S1_at--834--1931Chr05:2583940..2583964 (25 bp)
ACGGCAATGGCCAATACGTCGTCGG
LOC_Os05g05290
Os.55368.1.S1_at--139--8731Chr05:2583864..2583888 (25 bp)
TGTCATGATGACACCGGTGCCGTGG
LOC_Os05g05290
Os.55368.1.S1_at--666--2171Chr05:2583727..2583751 (25 bp)
ACACGGCCGAGAGCAACAGGCTCTT
LOC_Os05g05290
Os.55368.1.S1_at--954--71Chr05:2583689..2583713 (25 bp)
ATTGCCCATGGCTACTAATAGTTTT
LOC_Os05g05290
Os.55368.1.S1_at--108--5251Chr05:2583646..2583670 (25 bp)
GAATAATTCAGTTCGTGCCAATCAG
LOC_Os05g05290
Os.55368.1.S1_at--116--9211Chr05:2583631..2583655 (25 bp)
TGCCAATCAGCAGTAATCCATATGT
LOC_Os05g05290
Os.55368.1.S1_at--789--571Chr05:2583616..2583640 (25 bp)
ATCCATATGTACACAGCTAGCTAGC
LOC_Os05g05290
Os.55368.1.S1_at--792--3711Chr05:2583596..2583620 (25 bp)
CTAGCAGCTTTGGATTTGTTTCCCA
LOC_Os05g05290
Os.55368.1.S1_at--318--6851Chr05:2583579..2583603 (25 bp)
GTTTCCCAATTGTACAAGGTTGCAT
LOC_Os05g05290
Os.55368.1.S1_at--768--5491Chr05:2583537..2583561 (25 bp)
GAACATGCATGCTTCACTGGTCAAG
LOC_Os05g05290
Os.55368.1.S1_at--553--571Chr05:2583480..2583504 (25 bp)
ATCCTTTTAATTTTGTTGCACTGAA
LOC_Os05g05290
Target Sequence 
ACGGCAATGGCCAATACGTCGTCGGCGGCGGCGAGGAGGAGGAGGGCGTGGAGAGTGCGGTGGATGAGAAGGCCGGTGTC
ATGATGACACCGGTGCCGTGGTGGTGCTGGGCGGCGGAGAAGGCGCCGGTGACGGCGGCGAAAGCGAAGGCCACCGACGG
CGGCGCTCGTCGTGCGCCGCCGGCGGCGGAGGCGGTGGAGGACTCCGGAGGCCACACGGCCGAGAGCAACAGGCTCTTCT
GGGAGGCCTGCATTGCCCATGGCTACTAATAGTTTTTTTGGATTGATTACGTGCGAATAATTCAGTTCGTGCCAATCAGC
AGTAATCCATATGTACACAGCTAGCTAGCAGCTTTGGATTTGTTTCCCAATTGTACAAGGTTGCATGAGATGAGAGTGAT
GCAGAACATGCATGCTTCACTGGTCAAGATCTTCAAAAGATTCAGGACATGTAAGAGCAAATCCTTTTAATTTTGTTGCA
CTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis