Browse Element(s) Details


Os.53756.1.S1_at

Description gb:AK099724.1
DB_XREF= gi:32984933
TID=Os.53756.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53756 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089B16, full insert sequence.
FL= gb:AK099724.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g052609/11DNA repair helicase UVH6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05240Os.20065.1.S1_at11/115+2542239..2551171kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed
LOC_Os05g05250OsAffx.30226.2.S1_s_at7/115+2552234..2552791retrotransposon protein, putative, unclassified
LOC_Os05g05250OsAffx.442.1.S1_x_at3/115+2552234..2552791retrotransposon protein, putative, unclassified
LOC_Os05g05260Os.53756.1.S1_at9/115+2562822..2568136DNA repair helicase UVH6, putative, expressed
LOC_Os05g05270Os.49091.1.S1_at11/115+2573518..2576476sucrose-phosphatase, putative, expressed
LOC_Os05g05280Os.53552.1.S1_at11/115+2576565..2582182zinc finger family protein, putative, expressed
LOC_Os05g05280Os.2852.1.S1_at1/115+2576565..2582182zinc finger family protein, putative, expressed
LOC_Os05g05290Os.55368.1.S1_at11/115+2583464..2584282expressed protein
LOC_Os05g05300NANA5+2587556..2590142group II intron splicing factor CRS1, putative, expressed
LOC_Os05g05310Os.5008.1.S1_at11/115+2589701..2595265Fibronectin type III domain containing protein, expressed
LOC_Os05g05310Os.5008.1.S2_at11/115+2589701..2595265Fibronectin type III domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0009411biological_processresponse to UV
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53756.1.S1_at--482--5171Chr05:2564072..2564096 (25 bp)
GCAAGCTGCGCAATGTGTTGGCCGT
LOC_Os05g05260
Os.53756.1.S1_at--290--8471Chr05:2564054..2564078 (25 bp)
TGGCCGTGTGATCCGTTCTAAAGCA
LOC_Os05g05260
Os.53756.1.S1_at--539--2131Chr05:2563572..2563596 (25 bp)
ACAGTCGCCATGATAAACGGTCTAA
LOC_Os05g05260
Os.53756.1.S1_at--795--311Chr05:2563534..2563558 (25 bp)
ATACTGTCACACTTACATGATGCGC
LOC_Os05g05260
Os.53756.1.S1_at--993--291NONE
ATAGCTCGTGAGTTCCTACGGAGGA
NONE
Os.53756.1.S1_at--166--6011Chr05:2563056..2563080 (25 bp)
GAGAGAGTTTTCTGCTGTACAATAC
LOC_Os05g05260
Os.53756.1.S1_at--351--3151Chr05:2562965..2562989 (25 bp)
AATTCGAGCTGCACGGTTCATGCTA
LOC_Os05g05260
Os.53756.1.S1_at--767--771Chr05:2562910..2562934 (25 bp)
ATGTGATATTACTCTGCATCTGATA
LOC_Os05g05260
Os.53756.1.S1_at--1004--8711Chr05:2562879..2562903 (25 bp)
TGTACACCTTAAAGTCCTTCCGGAT
LOC_Os05g05260
Os.53756.1.S1_at--395--711Chr05:2562840..2562864 (25 bp)
ATGATGGCGGCCTCTGAATTTCAGA
LOC_Os05g05260
Os.53756.1.S1_at--574--10311Chr05:2562822..2562846 (25 bp)
TTTCAGACGTGTCGTTACATTGCCT
NONE
Target Sequence 
GCAAGCTGCGCAATGTGTTGGCCGTGTGATCCGTTCTAAAGCAGATTATGGAATGATGATATTTGCTGACAAGAGATACA
GTCGCCATGATAAACGGTCTAAACTGCCTGNGTGGATACTGTCACACTTACATGATGCGCNACCTAAATCTGAGCACTGA
TATGGCTTTGCATATAGCTCGTGAGTTCCTACGGAGGATGGCGCANCCTTACNATAAGACNGGGAGCGGCGGCNACAAGA
CTCTCTTAACCGAAGAGGATTTGCAGAATATGGCGCANGACGCCATGGAGATGTGAAACCATGAAAGAAATTGAAAGAGA
GGGAGGGGGAGAGAGAGTTTTCTGCTGTACAATACATTCAAAATTGAGGTAGAAGTCACTAATGTACAAAAAAATTTTGG
CTACTCATGTGAACCAGCATGAATTCGAGCTGCACGGTTCATGCTAAATTGCTAACAAATTGGTCCTTCCAAGCACATGT
GATATTACTCTGCATCTGATATAGGTATGTACACCTTAAAGTCCTTCCGGATACTTATATCTGAATATGATGGCGGCCTC
TGAATTTCAGACGTGTCGTTACATTGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53756.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis