Browse Element(s) Details


Os.20065.1.S1_at

Description gb:CB627000
DB_XREF= gi:29621989
DB_XREF=OSIIEb01K06.r
CLONE=OSIIEb01K06
TID=Os.20065.1
CNT=20
FEA=FLmRNA
TIER=Stack
STK=7
UG=Os.20065 (NCBI UniGene Cluster)
UG_TITLE=AD733 mRNA for protein phosphatase, partial sequence
FL= gb:AK120211.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0524011/11kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05210Os.14992.1.S1_x_at11/115+2514596..2518749LEC14B protein, putative, expressed
LOC_Os05g05210OsAffx.26740.1.S1_at11/115+2514596..2518749LEC14B protein, putative, expressed
LOC_Os05g05220Os.10499.1.S1_at11/115+2519360..2523990expressed protein
LOC_Os05g05230Os.52584.1.S1_at11/115+2526678..2537189homeotic gene regulator, putative, expressed
LOC_Os05g05240Os.20065.1.S1_at11/115+2542239..2551171kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed
LOC_Os05g05250OsAffx.30226.2.S1_s_at7/115+2552234..2552791retrotransposon protein, putative, unclassified
LOC_Os05g05250OsAffx.442.1.S1_x_at3/115+2552234..2552791retrotransposon protein, putative, unclassified
LOC_Os05g05260Os.53756.1.S1_at9/115+2562822..2568136DNA repair helicase UVH6, putative, expressed
LOC_Os05g05270Os.49091.1.S1_at11/115+2573518..2576476sucrose-phosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000164cellular_componentprotein phosphatase type 1 complex
GO:0000163molecular_functionprotein phosphatase type 1 activity
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20065.1.S1_at--603--10111Chr05:2550493..2550517 (25 bp)
TATGATACATCGTTGAACCACCTCC
LOC_Os05g05240
Os.20065.1.S1_at--1055--3391Chr05:2550517..2550541 (25 bp)
CAGCTTCTTGATCCATGTTTCTTGA
LOC_Os05g05240
Os.20065.1.S1_at--394--1931Chr05:2550541..2550565 (25 bp)
ACGGAAATCTCTTTACCAGTCACAA
LOC_Os05g05240
Os.20065.1.S1_at--1021--10411Chr05:2550576..2550600 (25 bp)
TTATACATCCAAACAACCTGCAGCC
LOC_Os05g05240
Os.20065.1.S1_at--240--1231Chr05:2550652..2550676 (25 bp)
AGTTCATTGTGACGCTTCAGTGTTC
LOC_Os05g05240
Os.20065.1.S1_at--84--6651Chr05:2550683..2550707 (25 bp)
GTTGATATGACTTCATCTCCTCGGT
LOC_Os05g05240
Os.20065.1.S1_at--720--2191Chr05:2550718..2550742 (25 bp)
ACAACCGTTCAGAGCTTCAAATCGT
LOC_Os05g05240
Os.20065.1.S1_at--590--8731Chr05:2550901..2550925 (25 bp)
TGTAATGACTGTACACCATGTCCCC
LOC_Os05g05240
Os.20065.1.S1_at--942--1091Chr05:2550926..2550950 (25 bp)
AGTGTGGGACGCTGCTTTGCACAGC
LOC_Os05g05240
Os.20065.1.S1_at--1013--2151Chr05:2550946..2550970 (25 bp)
ACAGCGCAGCTATACAAGGTTGTCG
LOC_Os05g05240
Os.20065.1.S1_at--499--8031Chr05:2550987..2551011 (25 bp)
GGAGCTTTGAGGCTTTATCCCGTCG
LOC_Os05g05240
Target Sequence 
TATGATACATCGTTGAACCACCTCCAGCTTCTTGATCCATGTTTCTTGACGGAAATCTCTTTACCAGTCACAAGGTACAT
ACATTATACATCCAAACAACCTGCAGCCGAGCATCACATCACAGGCCCCCTGTTTGTCGAAGGTGTTCATCTGGTGATTA
GTTCATTGTGACGCTTCAGTGTTCAGTGTAGTTGATATGACTTCATCTCCTCGGTTGGAAGCTACACAACCGTTCAGAGC
TTCAAATCGTAAGCGAAGCTATGTGCTTCCCGGTCCCTCTCATCTACACCAATTTTAAAGGACAGAATGGAATGATGAGC
AAATAATCGAGTTGTATGTACTTTGGGTGGTTTACCTGTAACTTTAGTGTACATGATTAGTTCATTGTTTACTCAGGAGT
AAGAAGGTTGTAATGACTGTACACCATGTCCCCAGTGTGGGACGCTGCTTTGCACAGCGCAGCTATACAAGGTTGTCGAA
GTTAGATTGGACGGGGAGCTTTGAGGCTTTATCCCGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20065.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis