Browse Element(s) Details


Os.10499.1.S1_at

Description gb:CB672517
DB_XREF= gi:29676242
DB_XREF=OSJNEe06J11.r
CLONE=OSJNEe06J11
TID=Os.10499.1
CNT=14
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.10499 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein sp:O22892 (A.thaliana) GSR2_ARATH Hypothetical protein At2g40430
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0522011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05160Os.26547.1.S1_at11/115+2489655..2496038Extracellular signal-regulated kinase 1, putative, expressed
LOC_Os05g05170Os.55311.1.S1_at10/115+2498823..2499640Jacalin-like lectin domain containing protein, expressed
LOC_Os05g05180Os.54708.1.S1_at11/115+2500945..2503210GH3 auxin-responsive promoter family protein, expressed
LOC_Os05g05190OsAffx.14553.1.S1_at11/115+2505032..2505475hypothetical protein
LOC_Os05g05200Os.25016.1.A1_at11/115+2506995..2514271MBOAT family protein, expressed
LOC_Os05g05210Os.14992.1.S1_x_at11/115+2514596..2518749LEC14B protein, putative, expressed
LOC_Os05g05210OsAffx.26740.1.S1_at11/115+2514596..2518749LEC14B protein, putative, expressed
LOC_Os05g05220Os.10499.1.S1_at11/115+2519360..2523990expressed protein
LOC_Os05g05230Os.52584.1.S1_at11/115+2526678..2537189homeotic gene regulator, putative, expressed
LOC_Os05g05240Os.20065.1.S1_at11/115+2542239..2551171kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10499.1.S1_at--1144--3371Chr05:2520214..2520238 (25 bp)
CAGCTCCTGTTCAAGTTCTATTAAC
LOC_Os05g05220
Os.10499.1.S1_at--493--1091Chr05:2520179..2520203 (25 bp)
AGTGGCTCTCTTAGAAAGCTGAAGG
LOC_Os05g05220
Os.10499.1.S1_at--738--2371Chr05:2520036..2520060 (25 bp)
AAACGTGGAATACTTGCACCAAGCA
LOC_Os05g05220
Os.10499.1.S1_at--861--5151Chr05:2519775..2519799 (25 bp)
GCAACGCTAGAAATGCCACCTGTGC
LOC_Os05g05220
Os.10499.1.S1_at--1105--4351Chr05:2519760..2519784 (25 bp)
CCACCTGTGCATGTTCCAGTACAAA
LOC_Os05g05220
Os.10499.1.S1_at--197--5751Chr05:2519715..2519739 (25 bp)
GACGTGGAGCGTCTTGAACAACATC
LOC_Os05g05220
Os.10499.1.S1_at--200--3611Chr05:2519669..2519693 (25 bp)
CATTGGAGAGCGCTCACAAGGCTAT
LOC_Os05g05220
Os.10499.1.S1_at--476--3051Chr05:2519640..2519664 (25 bp)
AATCGTACTCTTCAAACAGATCTGA
LOC_Os05g05220
Os.10499.1.S1_at--228--9851Chr05:2519547..2519571 (25 bp)
TACAAGTTTTGTAGTGCCAGGGCAA
LOC_Os05g05220
Os.10499.1.S1_at--912--1131Chr05:2519535..2519559 (25 bp)
AGTGCCAGGGCAATGCTCAATCGTT
LOC_Os05g05220
Os.10499.1.S1_at--401--4831Chr05:2519521..2519545 (25 bp)
GCTCAATCGTTGAATTGTCCTCTGA
LOC_Os05g05220
Target Sequence 
CAGCTCCTGTTCAAGTTCTATTAACAGAAGAGATTAGTGGCTCTCTTAGAAAGCTGAAGGGGTGCTGTAATCTAGCAAGG
GNACCGATATAAGAGCATCGAGAAACGTGGAATACTTGCACCAAGCAGAAAAATAAGGAAGCAACGCTAGAAATGCCACC
TGTGCATGTTCCAGTACAAATGANNNNNNNNNNNNNNNGGAACATGGCGATCCCAGACGTGGAGCGTCTTGAACAACATC
AAGGAACAGGCGCTGTGGAGGCATTGGAGAGCGCTCACAAGGCTATGGAAAATCGTACTCTTCAAACAGATCTGACGAAG
CCAAAATTGCTTCGGAAGTTTAGACGGATAGTTTATTCTCTTTATATTCGAGTTTTTAATTGTTACAAGTTTTGTAGTGC
CAGGGCAATGCTCAATCGTTGAATTGTCCTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis