Browse Element(s) Details


Os.52584.1.S1_at

Description gb:AK068173.1
DB_XREF= gi:32978191
TID=Os.52584.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52584 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013133N02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013133N02, full insert sequence.
FL= gb:AK068173.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0523011/11homeotic gene regulator, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05180Os.54708.1.S1_at11/115+2500945..2503210GH3 auxin-responsive promoter family protein, expressed
LOC_Os05g05190OsAffx.14553.1.S1_at11/115+2505032..2505475hypothetical protein
LOC_Os05g05200Os.25016.1.A1_at11/115+2506995..2514271MBOAT family protein, expressed
LOC_Os05g05210Os.14992.1.S1_x_at11/115+2514596..2518749LEC14B protein, putative, expressed
LOC_Os05g05210OsAffx.26740.1.S1_at11/115+2514596..2518749LEC14B protein, putative, expressed
LOC_Os05g05220Os.10499.1.S1_at11/115+2519360..2523990expressed protein
LOC_Os05g05230Os.52584.1.S1_at11/115+2526678..2537189homeotic gene regulator, putative, expressed
LOC_Os05g05240Os.20065.1.S1_at11/115+2542239..2551171kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed
LOC_Os05g05250OsAffx.30226.2.S1_s_at7/115+2552234..2552791retrotransposon protein, putative, unclassified
LOC_Os05g05250OsAffx.442.1.S1_x_at3/115+2552234..2552791retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0016585cellular_componentchromatin remodeling complex
GO:0003677molecular_functionDNA binding
GO:0003682molecular_functionchromatin binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52584.1.S1_at--830--1351Chr05:2527238..2527262 (25 bp)
AGAGACTCCAAGGATGGCTCCAAGA
LOC_Os05g05230
Os.52584.1.S1_at--147--5891Chr05:2527205..2527229 (25 bp)
GAGCGCTTATTCGTCTGATGTACAA
LOC_Os05g05230
Os.52584.1.S1_at--1159--8131Chr05:2526978..2527002 (25 bp)
GGAAAAGGTCAAGCCACTTCTCCAA
LOC_Os05g05230
Os.52584.1.S1_at--126--9651Chr05:2526949..2526973 (25 bp)
TCAGATTCAAAAGGGCGCTCGGCAT
LOC_Os05g05230
Os.52584.1.S1_at--494--4131Chr05:2526934..2526958 (25 bp)
CGCTCGGCATTCTAATCTTGGGATT
LOC_Os05g05230
Os.52584.1.S1_at--963--931Chr05:2526908..2526932 (25 bp)
AGGAATGTTGTTGCCCTGATGCATT
LOC_Os05g05230
Os.52584.1.S1_at--676--631Chr05:2526890..2526914 (25 bp)
ATGCATTTGTTTGAATCCTCTCCTT
LOC_Os05g05230
Os.52584.1.S1_at--157--2511Chr05:2526740..2526764 (25 bp)
AACATCGTAGTTGGCTTTCTGGTAT
LOC_Os05g05230
Os.52584.1.S1_at--914--2831Chr05:2526714..2526738 (25 bp)
AAGTAGATGTACTGTTCGTCTCGCC
LOC_Os05g05230
Os.52584.1.S1_at--87--9411Chr05:2526699..2526723 (25 bp)
TCGTCTCGCCGTGATATATCCAGTG
LOC_Os05g05230
Os.52584.1.S1_at--918--251Chr05:2526684..2526708 (25 bp)
ATATCCAGTGGCAGAGTGGCTTTCT
LOC_Os05g05230
Target Sequence 
AGAGACTCCAAGGATGGCTCCAAGAGCAAAGCGGAGCGCTTATTCGTCTGATGTACAAGAAGTCGATTTCAGTGAGAGGA
GGAAAAGGCATAAATCTCTAGTGAACATTGCAGATGATGCCAGCATTCCAATGTGGACACCAGAAAAAGTAAGGGCTGGG
GTTTCTTCATATAGCAAGGATGAGAATGAAGACGATGCCGAAGATGAATCCACCACAAGTGTTTTGCAGGGGGGCAGTTT
TACATGGAAGACCCTTAGAAGGAAAAGGTCAAGCCACTTCTCCAATTCCTCAGATTCAAAAGGGCGCTCGGCATTCTAAT
CTTGGGATTCAGGAATGTTGTTGCCCTGATGCATTTGTTTGAATCCTCTCCTTTGAGAAAGGAGTGCTCCTGGATAGAAA
TTAACAGGGGGTATTTAGGGTACATTTAAGCTTACAAATTTTAGGATTAGTGGTATTGTATGGATTTCTTGGTATTAAAT
TGTGTCCATCAGAACTAAAACATCGTAGTTGGCTTTCTGGTATAAAGTAGATGTACTGTTCGTCTCGCCGTGATATATCC
AGTGGCAGAGTGGCTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis