Browse Element(s) Details


OsAffx.26740.1.S1_at

Description tigr:9633.m00453
TID=OsAffx.26740.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=lec14b protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0521011/11LEC14B protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05160Os.26547.1.S1_at11/115+2489655..2496038Extracellular signal-regulated kinase 1, putative, expressed
LOC_Os05g05170Os.55311.1.S1_at10/115+2498823..2499640Jacalin-like lectin domain containing protein, expressed
LOC_Os05g05180Os.54708.1.S1_at11/115+2500945..2503210GH3 auxin-responsive promoter family protein, expressed
LOC_Os05g05190OsAffx.14553.1.S1_at11/115+2505032..2505475hypothetical protein
LOC_Os05g05200Os.25016.1.A1_at11/115+2506995..2514271MBOAT family protein, expressed
LOC_Os05g05210Os.14992.1.S1_x_at11/115+2514596..2518749LEC14B protein, putative, expressed
LOC_Os05g05210OsAffx.26740.1.S1_at11/115+2514596..2518749LEC14B protein, putative, expressed
LOC_Os05g05220Os.10499.1.S1_at11/115+2519360..2523990expressed protein
LOC_Os05g05230Os.52584.1.S1_at11/115+2526678..2537189homeotic gene regulator, putative, expressed
LOC_Os05g05240Os.20065.1.S1_at11/115+2542239..2551171kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26740.1.S1_at--1122--10191Chr05:2518621..2518645 (25 bp)
TATTTGTGCTCTCCTGATTGCAACA
LOC_Os05g05210
OsAffx.26740.1.S1_at--628--10251Chr05:2518623..2518647 (25 bp)
TTTGTGCTCTCCTGATTGCAACAGT
LOC_Os05g05210
OsAffx.26740.1.S1_at--855--8691Chr05:2518625..2518649 (25 bp)
TGTGCTCTCCTGATTGCAACAGTGT
LOC_Os05g05210
OsAffx.26740.1.S1_at--760--9091Chr05:2518627..2518651 (25 bp)
TGCTCTCCTGATTGCAACAGTGTAT
LOC_Os05g05210
OsAffx.26740.1.S1_at--666--8551Chr05:2518659..2518683 (25 bp)
TGAAAACAGTCGAAAACGGTAGCGT
LOC_Os05g05210
OsAffx.26740.1.S1_at--881--6831Chr05:2518682..2518706 (25 bp)
GTTTCTTTGGGCACAATTCTCAGTC
LOC_Os05g05210
OsAffx.26740.1.S1_at--361--3691Chr05:2518686..2518710 (25 bp)
CTTTGGGCACAATTCTCAGTCAGTC
LOC_Os05g05210
OsAffx.26740.1.S1_at--828--10831Chr05:2518688..2518712 (25 bp)
TTGGGCACAATTCTCAGTCAGTCAG
LOC_Os05g05210
OsAffx.26740.1.S1_at--385--7611Chr05:2518690..2518714 (25 bp)
GGGCACAATTCTCAGTCAGTCAGGA
LOC_Os05g05210
OsAffx.26740.1.S1_at--545--5131Chr05:2518692..2518716 (25 bp)
GCACAATTCTCAGTCAGTCAGGAAT
LOC_Os05g05210
OsAffx.26740.1.S1_at--1108--3171Chr05:2518695..2518719 (25 bp)
CAATTCTCAGTCAGTCAGGAATTGA
LOC_Os05g05210
Target Sequence 
TATTTGTGCTCTCCTGATTGCAACAGTGTATATAGGGGTGAAAACAGTCGAAAACGGTAGCGTTTCTTTGGGCACAATTC
TCAGTCAGTCAGGAATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26740.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis