Browse Element(s) Details


Os.55311.1.S1_at

Description gb:AK107844.1
DB_XREF= gi:32993053
TID=Os.55311.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55311 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-A01, full insert sequence.
FL= gb:AK107844.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0517010/11Jacalin-like lectin domain containing protein, expressed
LOC_Os12g139301/113-oxoacyl-reductase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05130Os.17855.1.S1_at11/115+2473057..2477460expressed protein
LOC_Os05g05140Os.17779.1.S1_at11/115+2477880..2481390expressed protein
LOC_Os05g05150OsAffx.4255.1.S1_at10/115+2484469..2487332DNA replication protein, putative, expressed
LOC_Os05g05160Os.26547.1.S1_at11/115+2489655..2496038Extracellular signal-regulated kinase 1, putative, expressed
LOC_Os05g05170Os.55311.1.S1_at10/115+2498823..2499640Jacalin-like lectin domain containing protein, expressed
LOC_Os05g05180Os.54708.1.S1_at11/115+2500945..2503210GH3 auxin-responsive promoter family protein, expressed
LOC_Os05g05190OsAffx.14553.1.S1_at11/115+2505032..2505475hypothetical protein
LOC_Os05g05200Os.25016.1.A1_at11/115+2506995..2514271MBOAT family protein, expressed
LOC_Os05g05210Os.14992.1.S1_x_at11/115+2514596..2518749LEC14B protein, putative, expressed
LOC_Os05g05210OsAffx.26740.1.S1_at11/115+2514596..2518749LEC14B protein, putative, expressed
LOC_Os05g05220Os.10499.1.S1_at11/115+2519360..2523990expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004316molecular_function3-oxoacyl-[acyl-carrier protein] reductase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55311.1.S1_at--973--9391Chr05:2499135..2499159 (25 bp)
TCGTCAGGTCGCTGGCGTTCGTCAC
LOC_Os05g05170
Os.55311.1.S1_at--758--9931Chr05:2499293..2499317 (25 bp)
TACGTGCACCCGTGACGTGACGACG
LOC_Os05g05170
Os.55311.1.S1_at--904--7371Chr05:2499309..2499333 (25 bp)
GTGACGACGCAGATGATTTACTTGT
LOC_Os05g05170
Os.55311.1.S1_at--1109--3752Chr12:7913706..7913729 (23 bp)
CTCTTCTGTCAGTCTTCTAGTTTTA
LOC_Os12g13930
Os.55311.1.S1_at--725--8811Chr05:2499383..2499407 (25 bp)
TGTTGAGGACTATTTCCTTGGCTCC
LOC_Os05g05170
Os.55311.1.S1_at--236--10211Chr05:2499393..2499417 (25 bp)
TATTTCCTTGGCTCCTGTTGCAGAA
LOC_Os05g05170
Os.55311.1.S1_at--542--6671Chr05:2499409..2499433 (25 bp)
GTTGCAGAACTCGTCTGATCAACAG
LOC_Os05g05170
Os.55311.1.S1_at--828--9611NONE
TCAGAGATTTAAGCTGCCTTTCCCC
NONE
Os.55311.1.S1_at--814--3371Chr05:2499471..2499495 (25 bp)
CACCACGACGCTAGTACATTTTTTC
LOC_Os05g05170
Os.55311.1.S1_at--747--10371Chr05:2499491..2499515 (25 bp)
TTTTCAGAACGTTCCATCTAGCTCT
LOC_Os05g05170
Os.55311.1.S1_at--696--6711Chr05:2499572..2499596 (25 bp)
GTTCTACTAAACATATCCTCACCTG
LOC_Os05g05170
Target Sequence 
TCGTCAGGTCGCTGGCGTTCGTCACCAGCGCCGGGAAGACGCACGGGCCGTTCGGCGAGGAGGTCGGCGGCGCGGCGTTC
CGCGTGCCGGTGAAGGGCGGCGGCCGCGTCGTCGGCTTCTTCGCGCGGTCTGGGTGGCTGCTCGACGCCGTCGGCGTCTA
CGTGCACCCGTGACGTGACGACGCAGATGATTTACTTGTTGTTGCATGCGTTCTCTCTTCTGTCAGTCTTCTAGTTTTAT
CTGAATATTGTTGAGGACTATTTCCTTGGCTCCTGTTGCAGAACTCGTCTGATCAACAGAAATTTCCTCAGAGATTTAAG
CTGCCTTTCCCCGCTTCACCACGACGCTAGTACATTTTTTCAGAACGTTCCATCTAGCTCTCTAGTTTTTTTAAGCTGAA
CCGTTTGGTTGAGCTTTAGGTAGATCTGAAAGTTGAAGTTCTACTAAACATATCCTCACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55311.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis