Browse Element(s) Details


OsAffx.4255.1.S1_at

Description tigr:9633.m00447
TID=OsAffx.4255.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0515010/11DNA replication protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05110Os.51864.1.S1_at11/115+2460207..2460655expressed protein
LOC_Os05g05120OsAffx.14551.1.S1_at11/115+2469873..2470130hypothetical protein
LOC_Os05g05130Os.17855.1.S1_at11/115+2473057..2477460expressed protein
LOC_Os05g05140Os.17779.1.S1_at11/115+2477880..2481390expressed protein
LOC_Os05g05150OsAffx.4255.1.S1_at10/115+2484469..2487332DNA replication protein, putative, expressed
LOC_Os05g05160Os.26547.1.S1_at11/115+2489655..2496038Extracellular signal-regulated kinase 1, putative, expressed
LOC_Os05g05170Os.55311.1.S1_at10/115+2498823..2499640Jacalin-like lectin domain containing protein, expressed
LOC_Os05g05180Os.54708.1.S1_at11/115+2500945..2503210GH3 auxin-responsive promoter family protein, expressed
LOC_Os05g05190OsAffx.14553.1.S1_at11/115+2505032..2505475hypothetical protein
LOC_Os05g05200Os.25016.1.A1_at11/115+2506995..2514271MBOAT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4255.1.S1_at--468--2591Chr05:2484562..2484586 (25 bp)
AACGAGAAGGCGTCTCCGGAGATCC
LOC_Os05g05150
OsAffx.4255.1.S1_at--983--8611Chr05:2484800..2484824 (25 bp)
TGGTGGTGTCGCTCTACCAGATGGA
LOC_Os05g05150
OsAffx.4255.1.S1_at--877--1311Chr05:2484818..2484842 (25 bp)
AGATGGATCTCGATCGCACGCTCTT
LOC_Os05g05150
OsAffx.4255.1.S1_at--150--711Chr05:2484997..2485021 (25 bp)
ATGATGCACATCTCCAAGTCTGAAG
LOC_Os05g05150
OsAffx.4255.1.S1_at--908--8991Chr05:2485017..2485041 (25 bp)
TGAAGATCTCTTGAGCCGGCTGTCG
LOC_Os05g05150
OsAffx.4255.1.S1_at--12--1551Chr05:2485197..2485221 (25 bp)
AGCATCTCGAGCAGTCAGTGCTGTC
LOC_Os05g05150
OsAffx.4255.1.S1_at--678--4651Chr05:2485216..2485240 (25 bp)
GCTGTCGAAGCTTCCATACGGGTAT
LOC_Os05g05150
OsAffx.4255.1.S1_at--231--10111Chr05:2485238..2485262 (25 bp)
TATGACTCCGTCACGAGGCAATCAT
LOC_Os05g05150
OsAffx.4255.1.S1_at--647--6191Chr05:2485252..2485276 (25 bp)
GAGGCAATCATTGTCGAGCACGGAG
LOC_Os05g05150
OsAffx.4255.1.S1_at--469--2111Chr05:2485281..2485305 (25 bp)
ACATGGGTATTCCTTTTGATCCTAT
LOC_Os05g05150
OsAffx.4255.1.S1_at--278--9251NONE
TCCTATAATTATTCCAGAGCCTCAG
NONE
Target Sequence 
AACGAGAAGGCGTCTCCGGAGATCCTTCGCTTCGACTCTCCCCTCGTCTCCCGCGTCCGCGAGCAGATCCAGCTCCTCGA
GGAGACGCTGGATGACTTCGGCGAGAGCGGCGTCGACGACCTGGTGGTGTCGCTCTACCAGATGGATCTCGATCGCACGC
TCTTCCTCCTCCGATCCTACCTCCGCCTCCGCCTACAAAAGATTGAGAAGTACATGATGCACATCTCCAAGTCTGAAGAT
CTCTTGAGCCGGCTGTCGCAGCAGGAGCAGCGATTTGCGAAGAGTTGTACGGAGATGATGGAGAAGCATCTCGAGCAGTC
AGTGCTGTCGAAGCTTCCATACGGGTATGACTCCGTCACGAGGCAATCATTGTCGAGCACGGAGGATGACATGGGTATTC
CTTTTGATCCTATAATTATTCCAGAGCCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4255.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis