Browse Element(s) Details


Os.51864.1.S1_at

Description gb:AK064113.1
DB_XREF= gi:32974131
TID=Os.51864.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51864 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-H08, full insert sequence.
FL= gb:AK064113.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0511011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05050Os.27639.1.S1_x_at9/115+2432300..2437728transposon protein, putative, unclassified
LOC_Os05g05050OsAffx.8980.1.S1_at4/115+2432300..2437728transposon protein, putative, unclassified
LOC_Os05g05050OsAffx.5632.1.A1_at1/115+2432300..2437728transposon protein, putative, unclassified
LOC_Os05g05060Os.8557.1.S1_at4/115+2442700..2442936expressed protein
LOC_Os05g05070OsAffx.4254.1.S1_at11/115+2445862..2446083hypothetical protein
LOC_Os05g05080OsAffx.26739.1.S1_s_at11/115+2448846..2449296expressed protein
LOC_Os05g05090Os.41695.15.S1_s_at11/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.5.S1_x_at9/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.3.S1_x_at8/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.2.S1_x_at8/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.4.S1_x_at1/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05100Os.50180.1.S1_at11/115+2455922..2456492expressed protein
LOC_Os05g05110Os.51864.1.S1_at11/115+2460207..2460655expressed protein
LOC_Os05g05120OsAffx.14551.1.S1_at11/115+2469873..2470130hypothetical protein
LOC_Os05g05130Os.17855.1.S1_at11/115+2473057..2477460expressed protein
LOC_Os05g05140Os.17779.1.S1_at11/115+2477880..2481390expressed protein
LOC_Os05g05150OsAffx.4255.1.S1_at10/115+2484469..2487332DNA replication protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51864.1.S1_at--850--5491Chr05:2460600..2460624 (25 bp)
GAACACATCAGAGAGCTAGATCATC
LOC_Os05g05110
Os.51864.1.S1_at--205--4871Chr05:2460586..2460610 (25 bp)
GCTAGATCATCAGCAGATCGATCAA
LOC_Os05g05110
Os.51864.1.S1_at--325--2411Chr05:2460557..2460581 (25 bp)
AAACACATTTCGTCATCGATCTGCA
LOC_Os05g05110
Os.51864.1.S1_at--966--2131Chr05:2460526..2460550 (25 bp)
ACAGTATGCCGAGTGTTCAGGAGAT
LOC_Os05g05110
Os.51864.1.S1_at--226--6111Chr05:2460516..2460540 (25 bp)
GAGTGTTCAGGAGATCAGCGTCCAC
LOC_Os05g05110
Os.51864.1.S1_at--26--10531Chr05:2460511..2460535 (25 bp)
TTCAGGAGATCAGCGTCCACAGGGT
LOC_Os05g05110
Os.51864.1.S1_at--819--9411Chr05:2460323..2460347 (25 bp)
TCGTCGACTCGTGCTACTGCGAAAA
LOC_Os05g05110
Os.51864.1.S1_at--606--9371Chr05:2460315..2460339 (25 bp)
TCGTGCTACTGCGAAAAAGCGTTAG
LOC_Os05g05110
Os.51864.1.S1_at--1020--10211Chr05:2460268..2460292 (25 bp)
TATTGCATGCAACACATAGATCTAC
LOC_Os05g05110
Os.51864.1.S1_at--448--3571Chr05:2460254..2460278 (25 bp)
CATAGATCTACATGCATGGATGGAT
LOC_Os05g05110
Os.51864.1.S1_at--559--8611Chr05:2460212..2460236 (25 bp)
TGGTGTTAATTTTCATTGACAGGTT
LOC_Os05g05110
Target Sequence 
GAACACATCAGAGAGCTAGATCATCAGCAGATCGATCAAGAAAAAACACATTTCGTCATCGATCTGCAGGACGAACAGTA
TGCCGAGTGTTCAGGAGATCAGCGTCCACAGGGTGGCCAAGATCGAGCCGACGACGCCGACGACGGTGGCGAACGCGGTG
AAGACGCCGGCGCCGCCTGCAGGCGGCGGCATTGACGCGGCAGCGGCGGGGTACATCGCCAAGATGAAGCGGCGGTGGGC
GGCGGAGTCGGCGGCGGCGGCGGCTGCATCGTCGTCGTCGTCGACTCGTGCTACTGCGAAAAAGCGTTAGAGATTAAGGA
AATCAAGGATTATATTGCATGCAACACATAGATCTACATGCATGGATGGATGAAAGTTAATTAGTTTTTGGTGTTAATTT
TCATTGACAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51864.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis