Browse Element(s) Details


OsAffx.14551.1.S1_at

Description tigr:9633.m00443
TID=OsAffx.14551.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0512011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05070OsAffx.4254.1.S1_at11/115+2445862..2446083hypothetical protein
LOC_Os05g05080OsAffx.26739.1.S1_s_at11/115+2448846..2449296expressed protein
LOC_Os05g05090Os.41695.15.S1_s_at11/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.5.S1_x_at9/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.3.S1_x_at8/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.2.S1_x_at8/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.4.S1_x_at1/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05100Os.50180.1.S1_at11/115+2455922..2456492expressed protein
LOC_Os05g05110Os.51864.1.S1_at11/115+2460207..2460655expressed protein
LOC_Os05g05120OsAffx.14551.1.S1_at11/115+2469873..2470130hypothetical protein
LOC_Os05g05130Os.17855.1.S1_at11/115+2473057..2477460expressed protein
LOC_Os05g05140Os.17779.1.S1_at11/115+2477880..2481390expressed protein
LOC_Os05g05150OsAffx.4255.1.S1_at10/115+2484469..2487332DNA replication protein, putative, expressed
LOC_Os05g05160Os.26547.1.S1_at11/115+2489655..2496038Extracellular signal-regulated kinase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14551.1.S1_at--1133--1591Chr05:2470053..2470077 (25 bp)
AGCTGCTGCTGTCTGCGTCGACAAG
LOC_Os05g05120
OsAffx.14551.1.S1_at--956--3831Chr05:2470051..2470075 (25 bp)
CTGCTGCTGTCTGCGTCGACAAGGT
LOC_Os05g05120
OsAffx.14551.1.S1_at--312--2891Chr05:2470031..2470055 (25 bp)
AAGGTGGCGAAGATTGGCCGGCAGC
LOC_Os05g05120
OsAffx.14551.1.S1_at--94--8251Chr05:2470012..2470036 (25 bp)
GGCAGCGGGAAGACGTCGATGGCGT
LOC_Os05g05120
OsAffx.14551.1.S1_at--722--5151Chr05:2469925..2469949 (25 bp)
GCAACGGCGTGGACATCTGGGCTCA
LOC_Os05g05120
OsAffx.14551.1.S1_at--573--2571Chr05:2469923..2469947 (25 bp)
AACGGCGTGGACATCTGGGCTCAGA
LOC_Os05g05120
OsAffx.14551.1.S1_at--67--8371Chr05:2469920..2469944 (25 bp)
GGCGTGGACATCTGGGCTCAGATCT
LOC_Os05g05120
OsAffx.14551.1.S1_at--551--8131Chr05:2469915..2469939 (25 bp)
GGACATCTGGGCTCAGATCTTCATC
LOC_Os05g05120
OsAffx.14551.1.S1_at--328--491Chr05:2469911..2469935 (25 bp)
ATCTGGGCTCAGATCTTCATCGACC
LOC_Os05g05120
OsAffx.14551.1.S1_at--964--8311Chr05:2469906..2469930 (25 bp)
GGCTCAGATCTTCATCGACCAGACG
LOC_Os05g05120
OsAffx.14551.1.S1_at--520--9651Chr05:2469903..2469927 (25 bp)
TCAGATCTTCATCGACCAGACGAGA
LOC_Os05g05120
Target Sequence 
AGCTGCTGCTGTCTGCGTCGACAAGGTGGCGAAGATTGGCCGGCAGCGGGAAGACGTCGATGGCGTCGGCGGCGGCGGCG
ACGACGCGGCGGTGGCGGTGGCGGTGGACAGGGTGGAGGAGATCGGCGGCAACGGCGTGGACATCTGGGCTCAGATCTTC
ATCGACCAGACGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis