Browse Element(s) Details


Os.17779.1.S1_at

Description gb:AK099030.1
DB_XREF= gi:32984239
TID=Os.17779.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17779 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013126M11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013126M11, full insert sequence.
FL= gb:AK072841.1 gb:AK099030.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0514011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05090Os.41695.15.S1_s_at11/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.5.S1_x_at9/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.3.S1_x_at8/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.2.S1_x_at8/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.4.S1_x_at1/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05100Os.50180.1.S1_at11/115+2455922..2456492expressed protein
LOC_Os05g05110Os.51864.1.S1_at11/115+2460207..2460655expressed protein
LOC_Os05g05120OsAffx.14551.1.S1_at11/115+2469873..2470130hypothetical protein
LOC_Os05g05130Os.17855.1.S1_at11/115+2473057..2477460expressed protein
LOC_Os05g05140Os.17779.1.S1_at11/115+2477880..2481390expressed protein
LOC_Os05g05150OsAffx.4255.1.S1_at10/115+2484469..2487332DNA replication protein, putative, expressed
LOC_Os05g05160Os.26547.1.S1_at11/115+2489655..2496038Extracellular signal-regulated kinase 1, putative, expressed
LOC_Os05g05170Os.55311.1.S1_at10/115+2498823..2499640Jacalin-like lectin domain containing protein, expressed
LOC_Os05g05180Os.54708.1.S1_at11/115+2500945..2503210GH3 auxin-responsive promoter family protein, expressed
LOC_Os05g05190OsAffx.14553.1.S1_at11/115+2505032..2505475hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17779.1.S1_at--1132--8491Chr05:2478431..2478455 (25 bp)
TGGCATCGCTGGAACTGGCTTGGCT
LOC_Os05g05140
Os.17779.1.S1_at--880--8791Chr05:2478407..2478431 (25 bp)
TGTTCTTCTCTCAGTTGTGTGCAAG
LOC_Os05g05140
Os.17779.1.S1_at--450--10831Chr05:2478393..2478417 (25 bp)
TTGTGTGCAAGATGGCTACCGGTAT
LOC_Os05g05140
Os.17779.1.S1_at--977--8991Chr05:2478369..2478393 (25 bp)
TGAAGAGTCCTATTGCTGCTACGCG
LOC_Os05g05140
Os.17779.1.S1_at--300--9091Chr05:2478353..2478377 (25 bp)
TGCTACGCGGCTGGTGAACACTGGT
LOC_Os05g05140
Os.17779.1.S1_at--994--2471Chr05:2478337..2478361 (25 bp)
AACACTGGTGTTGGACTTGGGCTCT
LOC_Os05g05140
Os.17779.1.S1_at--979--9551Chr05:2478315..2478339 (25 bp)
TCTTTTGGCTCTCCTGGGCAGTAAA
LOC_Os05g05140
Os.17779.1.S1_at--949--5411Chr05:2478258..2478282 (25 bp)
GAAGCCCAGGTGACATGAACTTGAA
LOC_Os05g05140
Os.17779.1.S1_at--732--5931Chr05:2478203..2478227 (25 bp)
GAGCATGAACGACATTCTCTTCAGA
LOC_Os05g05140
Os.17779.1.S1_at--146--51Chr05:2478032..2478056 (25 bp)
ATTGAGCAAATGATCCCCGGTAATT
LOC_Os05g05140
Os.17779.1.S1_at--905--431Chr05:2477892..2477916 (25 bp)
ATCTATCCAGCAGACAGGTTCCATA
LOC_Os05g05140
Target Sequence 
TGGCATCGCTGGAACTGGCTTGGCTGTTCTTCTCTCAGTTGTGTGCAAGATGGCTACCGGTATGAAGAGTCCTATTGCTG
CTACGCGGCTGGTGAACACTGGTGTTGGACTTGGGCTCTTTTGGCTCTCCTGGGCAGTAAACGGATTGCGAGACACAATT
ACTAGCATATTTAGAAGCCCAGGTGACATGAACTTGAAGGACGAAGAGGTTGCAGTCAGAATACAAAAGAGCATGAACGA
CATTCTCTTCAGAGCTATCACTATATTGGCAATCACTGCTTTTAAGTTTGCGTAAGTGGTTACATACTAATTTACCTTTT
CCCCGACCCACCTGTAATATATAATCCACCATTTTGGTTCAGGAGTACAGCACTAGTGCTTCTGTAGGATTAAGTGCCAA
TTGAGCAAATGATCCCCGGTAATTTTGTAGAAAATGAGAAACCGTTGTGAACTGTACAGAATTTTGCTGGCAGCTTGGTG
TATATGAAAGATGGGTTTTTTTCTTATCTGTAGATGAACAATCCAATGCCCAATGATTTATCTATCCAGCAGACAGGTTC
CATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis