Browse Element(s) Details


OsAffx.14553.1.S1_at

Description tigr:9633.m00451
TID=OsAffx.14553.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0519011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05140Os.17779.1.S1_at11/115+2477880..2481390expressed protein
LOC_Os05g05150OsAffx.4255.1.S1_at10/115+2484469..2487332DNA replication protein, putative, expressed
LOC_Os05g05160Os.26547.1.S1_at11/115+2489655..2496038Extracellular signal-regulated kinase 1, putative, expressed
LOC_Os05g05170Os.55311.1.S1_at10/115+2498823..2499640Jacalin-like lectin domain containing protein, expressed
LOC_Os05g05180Os.54708.1.S1_at11/115+2500945..2503210GH3 auxin-responsive promoter family protein, expressed
LOC_Os05g05190OsAffx.14553.1.S1_at11/115+2505032..2505475hypothetical protein
LOC_Os05g05200Os.25016.1.A1_at11/115+2506995..2514271MBOAT family protein, expressed
LOC_Os05g05210Os.14992.1.S1_x_at11/115+2514596..2518749LEC14B protein, putative, expressed
LOC_Os05g05210OsAffx.26740.1.S1_at11/115+2514596..2518749LEC14B protein, putative, expressed
LOC_Os05g05220Os.10499.1.S1_at11/115+2519360..2523990expressed protein
LOC_Os05g05230Os.52584.1.S1_at11/115+2526678..2537189homeotic gene regulator, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14553.1.S1_at--612--1671Chr05:2505420..2505444 (25 bp)
AGCCGCGTGGACAGCCAAGAGCCGA
LOC_Os05g05190
OsAffx.14553.1.S1_at--1160--6251Chr05:2505345..2505369 (25 bp)
GATGTGCAAGAATGTCGGTCGCGAC
LOC_Os05g05190
OsAffx.14553.1.S1_at--1098--7791Chr05:2505329..2505353 (25 bp)
GGTCGCGACATCAGTACGGTTAGCT
LOC_Os05g05190
OsAffx.14553.1.S1_at--1070--9991Chr05:2505309..2505333 (25 bp)
TAGCTGCTGAGGTCATAGACTCCGA
LOC_Os05g05190
OsAffx.14553.1.S1_at--994--10011Chr05:2505294..2505318 (25 bp)
TAGACTCCGAGGAACGCCAACAGCA
LOC_Os05g05190
OsAffx.14553.1.S1_at--947--3091Chr05:2505215..2505239 (25 bp)
AATAGCCGCAAACTCGGCGCGCTGT
LOC_Os05g05190
OsAffx.14553.1.S1_at--159--7711Chr05:2505179..2505203 (25 bp)
GGTGTGTAAGAACATCGACCTCCCC
LOC_Os05g05190
OsAffx.14553.1.S1_at--831--6171Chr05:2505150..2505174 (25 bp)
GAGGCTTTCAACTCCGAGGAACGCT
LOC_Os05g05190
OsAffx.14553.1.S1_at--1005--8951Chr05:2505107..2505131 (25 bp)
TGACAGGCCGGCGTGCGCCAGTTAC
LOC_Os05g05190
OsAffx.14553.1.S1_at--865--9791Chr05:2505086..2505110 (25 bp)
TTACCACCCCGCTGAGGACGCTGAA
LOC_Os05g05190
OsAffx.14553.1.S1_at--1065--6171Chr05:2505073..2505097 (25 bp)
GAGGACGCTGAACTACCATTGAATC
LOC_Os05g05190
Target Sequence 
AGCCGCGTGGACAGCCAAGAGCCGACGCCGCCGTCCTCAAGAAAAAGCAACCTCGGCGCATCGTGGCACCGCGCCGATGT
GCAAGAATGTCGGTCGCGACATCAGTACGGTTAGCTGCTGAGGTCATAGACTCCGAGGAACGCCAACAGCAACCCACCCC
ATTGTGGCCTGCGGGCGCCACACGCCGCCGACGTCTTCAAGAAACAATAGCCGCAAACTCGGCGCGCTGTGGCACCGCAC
CGGTGTGTAAGAACATCGACCTCCCCCGCCGAGGCTTTCAACTCCGAGGAACGCTGAGCGCCGCCACAGCCGCTGACAGG
CCGGCGTGCGCCAGTTACCACCCCGCTGAGGACGCTGAACTACCATTGAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14553.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis