Browse Element(s) Details


Os.17855.1.S1_at

Description gb:AK100211.1
DB_XREF= gi:32985420
TID=Os.17855.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17855 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023043L04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043L04, full insert sequence.
FL= gb:AK100211.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0513011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05080OsAffx.26739.1.S1_s_at11/115+2448846..2449296expressed protein
LOC_Os05g05090Os.41695.15.S1_s_at11/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.5.S1_x_at9/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.3.S1_x_at8/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.2.S1_x_at8/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.4.S1_x_at1/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05100Os.50180.1.S1_at11/115+2455922..2456492expressed protein
LOC_Os05g05110Os.51864.1.S1_at11/115+2460207..2460655expressed protein
LOC_Os05g05120OsAffx.14551.1.S1_at11/115+2469873..2470130hypothetical protein
LOC_Os05g05130Os.17855.1.S1_at11/115+2473057..2477460expressed protein
LOC_Os05g05140Os.17779.1.S1_at11/115+2477880..2481390expressed protein
LOC_Os05g05150OsAffx.4255.1.S1_at10/115+2484469..2487332DNA replication protein, putative, expressed
LOC_Os05g05160Os.26547.1.S1_at11/115+2489655..2496038Extracellular signal-regulated kinase 1, putative, expressed
LOC_Os05g05170Os.55311.1.S1_at10/115+2498823..2499640Jacalin-like lectin domain containing protein, expressed
LOC_Os05g05180Os.54708.1.S1_at11/115+2500945..2503210GH3 auxin-responsive promoter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17855.1.S1_at--618--5311Chr05:2476390..2476414 (25 bp)
GAAGGTTCTCAACTTCCGGAAGAGA
LOC_Os05g05130
Os.17855.1.S1_at--217--9551Chr05:2476726..2476750 (25 bp)
TCTATGGGACTGCAGGCCAGACTTA
LOC_Os05g05130
Os.17855.1.S1_at--921--4411Chr05:2476741..2477130 (25 bp)
GCCAGACTTAGTCCTTGGTGCAGAT
LOC_Os05g05130
Os.17855.1.S1_at--1112--231Chr05:2477134..2477158 (25 bp)
ATATATGATCCGGTCTGTGTGCCGC
LOC_Os05g05130
Os.17855.1.S1_at--657--3891Chr05:2477148..2477172 (25 bp)
CTGTGTGCCGCACCTTATTAGAGTG
LOC_Os05g05130
Os.17855.1.S1_at--358--1851Chr05:2477243..2477267 (25 bp)
ACGAATTCAGTAGCGCTGCGACAGA
LOC_Os05g05130
Os.17855.1.S1_at--243--2131Chr05:2477263..2477287 (25 bp)
ACAGAAGTTCCTGTCGCCTACATAG
LOC_Os05g05130
Os.17855.1.S1_at--261--311Chr05:2477284..2477308 (25 bp)
ATAGCCACAGTTATTCGGAATGCCG
LOC_Os05g05130
Os.17855.1.S1_at--1108--591Chr05:2477303..2477327 (25 bp)
ATGCCGAGACATTCAACTGTTTTGA
LOC_Os05g05130
Os.17855.1.S1_at--140--1611Chr05:2477334..2477358 (25 bp)
AGCTGCGGATGCCAAGTTGTCTGTT
LOC_Os05g05130
Os.17855.1.S1_at--347--151Chr05:2477365..2477389 (25 bp)
ATTACCAACAGTGAAGCTCCTTTGA
LOC_Os05g05130
Target Sequence 
GAAGGTTCTCAACTTCCGGAAGAGAACAAGAATAAGGTACAATGCAAATATCTTTCATGGGAAGAAACATCTGAAAGCGA
TCTATGGGACTGCAGGCCAGACTTAGTCCTTGGTGCAGATATAATATATGATCCGGTCTGTGTGCCGCACCTTATTAGAG
TGCTTTCTATGCTATTGAGAAGGGGGAATAATCGAGGAACTAATAATGTCGCAAACAAAGAAGAAACCAGCAACGAATTC
AGTAGCGCTGCGACAGAAGTTCCTGTCGCCTACATAGCCACAGTTATTCGGAATGCCGAGACATTCAACTGTTTTGACAA
AGCAGCTGCGGATGCCAAGTTGTCTGTTGTCAACATTACCAACAGTGAAGCTCCTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis