Browse Element(s) Details


OsAffx.5632.1.A1_at

Description tigr:9635.m04457
TID=OsAffx.5632.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g146901/11transposon protein, putative, unclassified
LOC_Os05g050501/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g14670OsAffx.29848.1.S1_at11/119+8691204..8696572Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os09g14670Os.5177.1.S1_s_at11/119+8691204..8696572Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os09g14670OsAffx.29848.1.S1_x_at11/119+8691204..8696572Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os09g14680Os.9598.1.S1_at11/119+8709148..8715891expressed protein
LOC_Os09g14690Os.27639.1.S1_x_at8/119+8718941..8724369transposon protein, putative, unclassified
LOC_Os09g14690OsAffx.8980.1.S1_at5/119+8718941..8724369transposon protein, putative, unclassified
LOC_Os09g14690OsAffx.5632.1.A1_at1/119+8718941..8724369transposon protein, putative, unclassified
LOC_Os09g14700OsAffx.17696.1.S1_at11/119+8726043..8728679expressed protein
LOC_Os09g14710OsAffx.16443.1.S1_at1/119+8735817..8738888retrotransposon protein, putative, unclassified
LOC_Os09g14720OsAffx.20387.1.S1_x_at1/119+8739696..8745772retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5632.1.A1_at--287--9236Chr09:8725002..8725022 (21 bp)
TCCTAGTGCAAAGTTCAACACGGCG
NONE
OsAffx.5632.1.A1_at--783--9852Chr07:26518890..26518914 (25 bp)
TAGTGCAAAGTTCAACACGGCGCCC
NONE
OsAffx.5632.1.A1_at--339--7271Chr07:26518888..26518912 (25 bp)
GTGCAAAGTTCAACACGGCGCCCAT
NONE
OsAffx.5632.1.A1_at--944--2472Chr06:10814553..10814639 (24 bp)
AACACGGCGCCCATGAGGCTGAGCG
NONE
OsAffx.5632.1.A1_at--971--2171Chr07:26518876..26518900 (25 bp)
ACACGGCGCCCATGAGGCTGAGCGT
NONE
OsAffx.5632.1.A1_at--418--1471Chr07:26518819..26518843 (25 bp)
AGAAGGCGAGCCACGCGTTCAGCGT
NONE
OsAffx.5632.1.A1_at--475--4611Chr07:26518814..26518838 (25 bp)
GCGAGCCACGCGTTCAGCGTCGACG
NONE
OsAffx.5632.1.A1_at--809--8971Chr07:26518693..26518717 (25 bp)
TGAACACCACCGTCGTGCCGAAGAT
NONE
OsAffx.5632.1.A1_at--1042--8611Chr07:26518666..26518690 (25 bp)
TGGTGTTCTTCGCCGCCCTCAGCAG
NONE
OsAffx.5632.1.A1_at--353--4231Chr07:26518618..26518642 (25 bp)
CCGACGTCGAGTTGGCCGTGCTGTT
NONE
OsAffx.5632.1.A1_at--948--7211Chr07:26518613..26518637 (25 bp)
GTCGAGTTGGCCGTGCTGTTGCTGA
NONE
Target Sequence 
TCCTAGTGCAAAGTTCAACACGGCGCCCATGAGGCTGAGCGTGCCGCGGCGCGCCGTGGAGTTGAACACGACGGAGAAGG
CGAGCCACGCGTTCAGCGTCGACGCCGCCTTGCCGTCGTAGAGGTAGAGCCCCTGCGCCCTCACCGCCGTCTCCTCCAGC
GACGGCGGCAGCGCGCTCGTCCCCTCCGTCATCGGGTCGTTGAACACCACCGTCGTGCCGAAGATGGTGGTGTTCTTCGC
CGCCCTCAGCAGCGCCGCCGGCGAGGCGACCACCGCCGACGTCGAGTTGGCCGTGCTGTTGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5632.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis