Browse Element(s) Details


OsAffx.29848.1.S1_x_at

Description tigr:9637.m01179
TID=OsAffx.29848.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=phosphoenolpyruvate carboxylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1467011/11Phosphoenolpyruvate carboxylase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g14614Os.49341.1.S1_x_at11/119+8664791..8666872expressed protein
LOC_Os09g14614Os.49341.1.S1_at10/119+8664791..8666872expressed protein
LOC_Os09g14614Os.23317.1.S1_at4/119+8664791..8666872expressed protein
LOC_Os09g14614Os.51537.1.S1_at1/119+8664791..8666872expressed protein
LOC_Os09g14620NANA9+8670528..8673278retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g14630Os.9332.2.S1_at1/119+8676237..8679936transposon protein, putative, unclassified
LOC_Os09g14630Os.9332.2.S1_x_at1/119+8676237..8679936transposon protein, putative, unclassified
LOC_Os09g14640OsAffx.25156.5.S1_x_at2/119+8681707..8683764hypothetical protein
LOC_Os09g14640OsAffx.25156.4.S1_x_at2/119+8681707..8683764hypothetical protein
LOC_Os09g14640OsAffx.25156.1.S1_x_at2/119+8681707..8683764hypothetical protein
LOC_Os09g14650Os.11575.4.S1_x_at5/119+8684056..8684710transposon protein, putative, Pong sub-class
LOC_Os09g14650Os.11575.3.S1_x_at2/119+8684056..8684710transposon protein, putative, Pong sub-class
LOC_Os09g14660OsAffx.6274.1.S1_at11/119+8688905..8690567Protein kinase domain containing protein
LOC_Os09g14670OsAffx.29848.1.S1_at11/119+8691204..8696572Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os09g14670Os.5177.1.S1_s_at11/119+8691204..8696572Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os09g14670OsAffx.29848.1.S1_x_at11/119+8691204..8696572Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os09g14680Os.9598.1.S1_at11/119+8709148..8715891expressed protein
LOC_Os09g14690Os.27639.1.S1_x_at8/119+8718941..8724369transposon protein, putative, unclassified
LOC_Os09g14690OsAffx.8980.1.S1_at5/119+8718941..8724369transposon protein, putative, unclassified
LOC_Os09g14690OsAffx.5632.1.A1_at1/119+8718941..8724369transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006099biological_processtricarboxylic acid cycle
GO:0008964molecular_functionphosphoenolpyruvate carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29848.1.S1_x_at--265--2431Chr09:8691775..8691921 (25 bp)
AAAAGCTGCTTCTTCAGGTTGCTGG
LOC_Os09g14670
OsAffx.29848.1.S1_x_at--921--3651Chr09:8691764..8691788 (25 bp)
CTTCAGGTTGCTGGCCATAGGGATC
LOC_Os09g14670
OsAffx.29848.1.S1_x_at--459--8451Chr09:8691753..8691777 (25 bp)
TGGCCATAGGGATCTTCTTGAAGGT
LOC_Os09g14670
OsAffx.29848.1.S1_x_at--994--9551Chr09:8691738..8691762 (25 bp)
TCTTGAAGGTGACCCCTACCTGAAG
LOC_Os09g14670
OsAffx.29848.1.S1_x_at--1021--2631Chr09:8691664..8691688 (25 bp)
AAGCCTACACGCTGAAACGGATCCG
LOC_Os09g14670
OsAffx.29848.1.S1_x_at--801--1571Chr09:8691556..8691580 (25 bp)
AGCTGAACCCGGGTAGCGAGTACGC
LOC_Os09g14670
OsAffx.29848.1.S1_x_at--472--6111Chr09:8691442..8691466 (25 bp)
GAGTGCCATCTTTTTTGTATCTTTC
LOC_Os09g14670
OsAffx.29848.1.S1_x_at--1072--8831Chr09:8691414..8691438 (25 bp)
TGATCATTTGCCTTGGGCCCTGTTA
LOC_Os09g14670
OsAffx.29848.1.S1_x_at--1070--7551Chr09:8691400..8691424 (25 bp)
GGGCCCTGTTATTTTGGATACTGCT
LOC_Os09g14670
OsAffx.29848.1.S1_x_at--1111--6911Chr09:8691269..8691293 (25 bp)
GTATGTTCTTCTCGTGTTTTATGCT
LOC_Os09g14670
OsAffx.29848.1.S1_x_at--754--5891Chr09:8691239..8691263 (25 bp)
GAGCTCTTGTTTCTGGCATGTTCAA
LOC_Os09g14670
Target Sequence 
AAAAGCTGCTTCTTCAGGTTGCTGGCCATAGGGATCTTCTTGAAGGTGACCCCTACCTGAAGCAGCGGCTCCGACTCCGC
GACGCCTACATAACCACCCTGAATGTCTGCCAAGCCTACACGCTGAAACGGATCCGCGACCCGGATTACCACGTCACGCT
GCGCCCTCACCTGTCCAAGGAGGTGATGGATGGGAGCAAGCCGGCCGCGGAGCTTGTGAAGCTGAACCCGGGTAGCGAGT
ACGCGCCAGGGCTGGAGGACACCCTCATCCTGACCATGAAGGGCATTGCTGCAGGGTTGCAGAACACTGGTTAAGACTTA
GGAGAGATTGCCTGAGTGCCATCTTTTTTGTATCTTTCCTTTGATCATTTGCCTTGGGCCCTGTTATTTTGGATACTGCT
GAATATTGGTCTCCTTACTGAGGGAGGGGTAACAAATACCGGCGTTTTTTTGCCTATGTATATTATTACTGAAATAAAAG
GAGACCATGATCATTATAATAACCTAGTATGTTCTTCTCGTGTTTTATGCTTAACAGAGCTCTTGTTTCTGGCATGTTCA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29848.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis