Browse Element(s) Details


OsAffx.6274.1.S1_at

Description tigr:9637.m01178
TID=OsAffx.6274.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to receptor like protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1466011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g14614Os.49341.1.S1_x_at11/119+8664791..8666872expressed protein
LOC_Os09g14614Os.49341.1.S1_at10/119+8664791..8666872expressed protein
LOC_Os09g14614Os.23317.1.S1_at4/119+8664791..8666872expressed protein
LOC_Os09g14614Os.51537.1.S1_at1/119+8664791..8666872expressed protein
LOC_Os09g14620NANA9+8670528..8673278retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g14630Os.9332.2.S1_at1/119+8676237..8679936transposon protein, putative, unclassified
LOC_Os09g14630Os.9332.2.S1_x_at1/119+8676237..8679936transposon protein, putative, unclassified
LOC_Os09g14640OsAffx.25156.5.S1_x_at2/119+8681707..8683764hypothetical protein
LOC_Os09g14640OsAffx.25156.4.S1_x_at2/119+8681707..8683764hypothetical protein
LOC_Os09g14640OsAffx.25156.1.S1_x_at2/119+8681707..8683764hypothetical protein
LOC_Os09g14650Os.11575.4.S1_x_at5/119+8684056..8684710transposon protein, putative, Pong sub-class
LOC_Os09g14650Os.11575.3.S1_x_at2/119+8684056..8684710transposon protein, putative, Pong sub-class
LOC_Os09g14660OsAffx.6274.1.S1_at11/119+8688905..8690567Protein kinase domain containing protein
LOC_Os09g14670OsAffx.29848.1.S1_at11/119+8691204..8696572Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os09g14670Os.5177.1.S1_s_at11/119+8691204..8696572Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os09g14670OsAffx.29848.1.S1_x_at11/119+8691204..8696572Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os09g14680Os.9598.1.S1_at11/119+8709148..8715891expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6274.1.S1_at--1141--6371Chr09:8689669..8689693 (25 bp)
GATCGTTGTCAACTTCCTAACCATA
LOC_Os09g14660
OsAffx.6274.1.S1_at--392--411Chr09:8689622..8689646 (25 bp)
ATCAGTACTGGTTGCCATGTCTGTC
LOC_Os09g14660
OsAffx.6274.1.S1_at--926--4331Chr09:8689608..8689632 (25 bp)
CCATGTCTGTCCTTGTTGCTGTTAT
LOC_Os09g14660
OsAffx.6274.1.S1_at--5--6811Chr09:8689588..8689612 (25 bp)
GTTATTGTTGTTTTGCTATGCCGCA
LOC_Os09g14660
OsAffx.6274.1.S1_at--632--4811Chr09:8689296..8689539 (25 bp)
GCTCTTTCAGGCTACTGCCGATAAA
LOC_Os09g14660
OsAffx.6274.1.S1_at--782--2911Chr09:8689270..8689294 (25 bp)
AAGGAGCTTCTCTTAGTCTACGACT
LOC_Os09g14660
OsAffx.6274.1.S1_at--851--2311Chr09:8689159..8689183 (25 bp)
AAAGGTATCACATCTGGCCTCTTTT
LOC_Os09g14660
OsAffx.6274.1.S1_at--83--5951Chr09:8689117..8689141 (25 bp)
GAGCACGTAGTCATCCACCGTGATA
LOC_Os09g14660
OsAffx.6274.1.S1_at--192--1911Chr09:8689080..8689104 (25 bp)
ACGTGCTCCTTGATACCGACATGAA
LOC_Os09g14660
OsAffx.6274.1.S1_at--13--2171Chr09:8688999..8689023 (25 bp)
ACACTACGCATTTCGCTGGTACATG
LOC_Os09g14660
OsAffx.6274.1.S1_at--248--231Chr09:8688969..8688993 (25 bp)
ATATTGCCCCTGAGCTATCAAGACT
LOC_Os09g14660
Target Sequence 
GATCGTTGTCAACTTCCTAACCATAACATATTAGCCATTGTTATATTATCAGTACTGGTTGCCATGTCTGTCCTTGTTGC
TGTTATTGTTGTTTTGCTATGCCGCAAGAAGAAAGCTGGGAAATGTGAAGATTGGGAGGCCAAATGTGGGCCACGCTCTT
TCAGGCTACTGCCGATAAAAAAGGAGCTTCTCTTAGTCTACGACTATATGCCCAATGGCAGCCTCGATAAGTACTTACAT
GATCAGGATAACACACCTACTATAGGTTGGGCTATGAGGCTTGGCATAATCAAAGGTATCACATCTGGCCTCTTTTACCT
ACATGAGGACTGGGAGCACGTAGTCATCCACCGTGATATCAAGACGAGCAACGTGCTCCTTGATACCGACATGAACGGGA
GGCTTGGTGACTTTGGCCTTGCAAGGTTGCATGACCATGGAGCTGATGCGCACACTACGCATTTCGCTGGTACATGGGGA
TATATTGCCCCTGAGCTATCAAGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6274.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis