Browse Element(s) Details


Os.5177.1.S1_s_at

Description gb:BQ906723
DB_XREF= gi:22305501
DB_XREF=M018B07
CLONE=M018B07
TID=Os.5177.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.5177 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_175738.1 (A.thaliana) phosphoenolpyruvate carboxylase 1, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1467011/11Phosphoenolpyruvate carboxylase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g14614Os.49341.1.S1_x_at11/119+8664791..8666872expressed protein
LOC_Os09g14614Os.49341.1.S1_at10/119+8664791..8666872expressed protein
LOC_Os09g14614Os.23317.1.S1_at4/119+8664791..8666872expressed protein
LOC_Os09g14614Os.51537.1.S1_at1/119+8664791..8666872expressed protein
LOC_Os09g14620NANA9+8670528..8673278retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g14630Os.9332.2.S1_at1/119+8676237..8679936transposon protein, putative, unclassified
LOC_Os09g14630Os.9332.2.S1_x_at1/119+8676237..8679936transposon protein, putative, unclassified
LOC_Os09g14640OsAffx.25156.5.S1_x_at2/119+8681707..8683764hypothetical protein
LOC_Os09g14640OsAffx.25156.4.S1_x_at2/119+8681707..8683764hypothetical protein
LOC_Os09g14640OsAffx.25156.1.S1_x_at2/119+8681707..8683764hypothetical protein
LOC_Os09g14650Os.11575.4.S1_x_at5/119+8684056..8684710transposon protein, putative, Pong sub-class
LOC_Os09g14650Os.11575.3.S1_x_at2/119+8684056..8684710transposon protein, putative, Pong sub-class
LOC_Os09g14660OsAffx.6274.1.S1_at11/119+8688905..8690567Protein kinase domain containing protein
LOC_Os09g14670OsAffx.29848.1.S1_at11/119+8691204..8696572Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os09g14670Os.5177.1.S1_s_at11/119+8691204..8696572Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os09g14670OsAffx.29848.1.S1_x_at11/119+8691204..8696572Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os09g14680Os.9598.1.S1_at11/119+8709148..8715891expressed protein
LOC_Os09g14690Os.27639.1.S1_x_at8/119+8718941..8724369transposon protein, putative, unclassified
LOC_Os09g14690OsAffx.8980.1.S1_at5/119+8718941..8724369transposon protein, putative, unclassified
LOC_Os09g14690OsAffx.5632.1.A1_at1/119+8718941..8724369transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006099biological_processtricarboxylic acid cycle
GO:0008964molecular_functionphosphoenolpyruvate carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5177.1.S1_s_at--876--7931Chr09:8691633..8691657 (25 bp)
GGATTACCACGTCACGCTGCGCCCT
LOC_Os09g14670
Os.5177.1.S1_s_at--31--9171Chr09:8691616..8691640 (25 bp)
TGCGCCCTCACCTGTCCAAGGAGGT
LOC_Os09g14670
Os.5177.1.S1_s_at--158--4191Chr09:8691612..8691636 (25 bp)
CCCTCACCTGTCCAAGGAGGTGATG
LOC_Os09g14670
Os.5177.1.S1_s_at--874--3591Chr09:8691563..8691587 (25 bp)
CTTGTGAAGCTGAACCCGGGTAGCG
LOC_Os09g14670
Os.5177.1.S1_s_at--800--1571Chr09:8691556..8691580 (25 bp)
AGCTGAACCCGGGTAGCGAGTACGC
LOC_Os09g14670
Os.5177.1.S1_s_at--51--3831Chr09:8691554..8691578 (25 bp)
CTGAACCCGGGTAGCGAGTACGCGC
LOC_Os09g14670
Os.5177.1.S1_s_at--981--1131Chr09:8691441..8691465 (25 bp)
AGTGCCATCTTTTTTGTATCTTTCC
LOC_Os09g14670
Os.5177.1.S1_s_at--670--10411Chr09:8691251..8691275 (25 bp)
TTATGCTTAACAGAGCTCTTGTTTC
LOC_Os09g14670
Os.5177.1.S1_s_at--753--5891Chr09:8691239..8691263 (25 bp)
GAGCTCTTGTTTCTGGCATGTTCAA
LOC_Os09g14670
Os.5177.1.S1_s_at--1015--4811Chr09:8691237..8691261 (25 bp)
GCTCTTGTTTCTGGCATGTTCAATA
LOC_Os09g14670
Os.5177.1.S1_s_at--607--3611Chr09:8691234..8691258 (25 bp)
CTTGTTTCTGGCATGTTCAATAAAG
LOC_Os09g14670
Target Sequence 
GGATTACCACGTCACGCTGCGCCCTCACCTGTCCAAGGAGGTGATGGATGGGAGCAAGCCGNGCCGNCGGAGCTTGTGAA
GCTGAACCCGGGTAGCGAGTACGCGCNCAGGGCNTGGAGGACACCCTCATCCTGACCATGAAGGGCATTGCTGCAGGGTT
GCAGAACACTGGTTAAGACTTAGGAGAGATTGCCTGAGTGCCATCTTTTTTGTATCTTTCCTTTGATCATTNTGCCTTGG
GCCCTGTTATTTTNGGATACTGCTGAATATTGGTCTCCTTACTGANGGGAGGGGTAACAAATACCGGCGNTTTTTTTGCC
TATGTATATTATTACTGAAATAAAAGGAGACCATGATCATTATAATAACCTAGTATGTTNTTCTCGTGTTTTATGCTTAA
CAGAGCTCTTGTTTCTGGCATGTTCAATAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5177.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis