Browse Element(s) Details


Os.51537.1.S1_at

Description gb:AK063020.1
DB_XREF= gi:32973038
TID=Os.51537.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51537 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-B02, full insert sequence.
FL= gb:AK063020.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g542201/11expressed protein
LOC_Os09g146141/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54180NANA3+31010290..31010564hypothetical protein
LOC_Os03g54190OsAffx.13487.1.S1_at11/113+31014511..31016225expressed protein
LOC_Os03g54200Os.7237.1.S1_a_at11/113+31028016..31030309expressed protein
LOC_Os03g54210OsAffx.25712.1.S1_at11/113+31031792..31032259hypothetical protein
LOC_Os03g54220Os.23317.1.S1_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.52485.1.S1_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.23317.1.S2_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.49341.1.S1_x_at5/113+31033044..31037646expressed protein
LOC_Os03g54220Os.51537.1.S1_at1/113+31033044..31037646expressed protein
LOC_Os03g54230OsAffx.13488.1.S1_at11/113+31041615..31042091Imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative
LOC_Os03g54240Os.49363.3.S1_at11/113+31044663..31047885expressed protein
LOC_Os03g54240Os.49363.1.S1_x_at10/113+31044663..31047885expressed protein
LOC_Os03g54244NANA3+31059931..31063555retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0000904biological_processcellular morphogenesis during differentiation
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51537.1.S1_at--1149--2794Chr11:25771821..25771933 (25 bp)
AAGATGCGAGACTCACTCTTCTTCA
NONE
Os.51537.1.S1_at--764--10133Chr11:25771070..25771094 (25 bp)
TATGCTTCCTACTCAAATCGCTATT
NONE
Os.51537.1.S1_at--361--1092Chr11:25770844..25770868 (25 bp)
AGTGAAGAACCTGCCAACAGATCAA
NONE
Os.51537.1.S1_at--687--9112Chr11:25770799..25770823 (25 bp)
TGCTGCAGCGCTTCAACACATTAGC
NONE
Os.51537.1.S1_at--936--10491NONE
TTCAACACATTAGCGCTTCCAGATA
NONE
Os.51537.1.S1_at--978--1252Chr08:18013952..18013976 (25 bp)
AGATATGCTGTGTTCTGACCAGTAA
NONE
Os.51537.1.S1_at--786--5291NONE
GAAGGCTCTAGATCACTCTAGCGTG
NONE
Os.51537.1.S1_at--917--9993Chr11:25770066..25770090 (25 bp)
TAGCGTGTGGCCTTGGTGTACTAGC
NONE
Os.51537.1.S1_at--383--7753Chr11:25770052..25770076 (25 bp)
GGTGTACTAGCCACTTGCCAGGAAA
NONE
Os.51537.1.S1_at--773--4893Chr11:25770009..25770033 (25 bp)
GCTTATGGCACGAGCTGGAGACATG
NONE
Os.51537.1.S1_at--771--7532Chr08:18013588..18013612 (25 bp)
GTGGCAGCATTTTTCTCAGTTTACA
NONE
Target Sequence 
AAGATGCGAGACTCACTCTTCTTCAGGACGTCAGGTTCCTTCATCACCCGGGTACTCTTCCCTACTGTGAAAGAGGATGA
TATGCTTCCTACTCAAATCGCTATTCAGTTGACTAATGAGTGAATGCAAAGTTCAATTCAGTGCAGTGAAGAACCTGCCA
ACAGATCAAGGGCGAGGGCAGGGGAAGGGTGCTGCAGCGCTTCAACACATTAGCGCTTCCAGATATGCTGTGTTCTGACC
AGTAAATTGATGTCAAAAGATCGAAGGCTCTAGATCACTCTAGCGTGTGGCCTTGGTGTACTAGCCACTTGCCAGGAAAA
GGAGTGTGGGAGTGGGAGCTTATGGCACGAGCTGGAGACATGGAGAGAGNTTAGCAGGTTCATTAGAAGTGAAATTGTAG
CAGAGATTTCTTGATGGAAATTTGACATTGATCNGAANCTATTTGTATGCAAATTATGTGGCAGCATTTTTCTCAGTTTA
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51537.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis