Browse Element(s) Details


OsAffx.25712.1.S1_at

Description tigr:9631.m05325
TID=OsAffx.25712.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5421011/11hypothetical protein
LOC_Os12g052002/11DNA-binding family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54180NANA3+31010290..31010564hypothetical protein
LOC_Os03g54190OsAffx.13487.1.S1_at11/113+31014511..31016225expressed protein
LOC_Os03g54200Os.7237.1.S1_a_at11/113+31028016..31030309expressed protein
LOC_Os03g54210OsAffx.25712.1.S1_at11/113+31031792..31032259hypothetical protein
LOC_Os03g54220Os.23317.1.S1_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.52485.1.S1_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.23317.1.S2_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.49341.1.S1_x_at5/113+31033044..31037646expressed protein
LOC_Os03g54220Os.51537.1.S1_at1/113+31033044..31037646expressed protein
LOC_Os03g54230OsAffx.13488.1.S1_at11/113+31041615..31042091Imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative
LOC_Os03g54240Os.49363.3.S1_at11/113+31044663..31047885expressed protein
LOC_Os03g54240Os.49363.1.S1_x_at10/113+31044663..31047885expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25712.1.S1_at--336--10054Chr12:2307488..2307508 (21 bp)
TAGTTCATTTTCTAGGAGTAGCTTT
LOC_Os12g05200
OsAffx.25712.1.S1_at--53--10554Chr03:31031960..31031984 (25 bp)
TTCATTTTCTAGGAGTAGCTTTGCC
LOC_Os03g54210
OsAffx.25712.1.S1_at--188--3591Chr03:31031962..31031986 (25 bp)
CATTTTCTAGGAGTAGCTTTGCCAA
LOC_Os03g54210
OsAffx.25712.1.S1_at--778--10371Chr03:31031964..31031988 (25 bp)
TTTTCTAGGAGTAGCTTTGCCAACT
LOC_Os03g54210
OsAffx.25712.1.S1_at--1005--10291Chr03:31031965..31031989 (25 bp)
TTTCTAGGAGTAGCTTTGCCAACTC
LOC_Os03g54210
OsAffx.25712.1.S1_at--620--10091Chr03:31031969..31031993 (25 bp)
TAGGAGTAGCTTTGCCAACTCCACT
LOC_Os03g54210
OsAffx.25712.1.S1_at--1093--6071Chr03:31031972..31031996 (25 bp)
GAGTAGCTTTGCCAACTCCACTCAA
LOC_Os03g54210
OsAffx.25712.1.S1_at--1136--6951Chr03:31031974..31031998 (25 bp)
GTAGCTTTGCCAACTCCACTCAAAA
LOC_Os03g54210
OsAffx.25712.1.S1_at--416--1531Chr03:31031976..31032000 (25 bp)
AGCTTTGCCAACTCCACTCAAAAAA
LOC_Os03g54210
OsAffx.25712.1.S1_at--1080--10674Chr11:4370099..4370118 (20 bp)
TTGCCAACTCCACTCAAAAAATGGA
NONE
OsAffx.25712.1.S1_at--250--2254Chr12:2307529..2307553 (25 bp)
AAAATGGAGGATCTGGACCGTTTGG
LOC_Os12g05200
Target Sequence 
TAGTTCATTTTCTAGGAGTAGCTTTGCCAACTCCACTCAAAAAATGGAGGATCTGGACCGTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25712.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis