Browse Element(s) Details


Os.52485.1.S1_at

Description gb:AK067449.1
DB_XREF= gi:32977467
TID=Os.52485.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52485 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013107L13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013107L13, full insert sequence.
FL= gb:AK067449.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5422011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54180NANA3+31010290..31010564hypothetical protein
LOC_Os03g54190OsAffx.13487.1.S1_at11/113+31014511..31016225expressed protein
LOC_Os03g54200Os.7237.1.S1_a_at11/113+31028016..31030309expressed protein
LOC_Os03g54210OsAffx.25712.1.S1_at11/113+31031792..31032259hypothetical protein
LOC_Os03g54220Os.23317.1.S1_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.52485.1.S1_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.23317.1.S2_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.49341.1.S1_x_at5/113+31033044..31037646expressed protein
LOC_Os03g54220Os.51537.1.S1_at1/113+31033044..31037646expressed protein
LOC_Os03g54230OsAffx.13488.1.S1_at11/113+31041615..31042091Imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative
LOC_Os03g54240Os.49363.3.S1_at11/113+31044663..31047885expressed protein
LOC_Os03g54240Os.49363.1.S1_x_at10/113+31044663..31047885expressed protein
LOC_Os03g54244NANA3+31059931..31063555retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52485.1.S1_at--907--3191Chr03:31037292..31037316 (25 bp)
CAAGGGATTCAAGGCCCCTGTTCAG
LOC_Os03g54220
Os.52485.1.S1_at--567--4291Chr03:31037247..31037270 (24 bp)
CCTTCTATACAGCATCCTTTGACTA
LOC_Os03g54220
Os.52485.1.S1_at--146--3691Chr03:31037151..31037254 (25 bp)
CTTTGACTAGCAAGCAACCTGGGAA
LOC_Os03g54220
Os.52485.1.S1_at--360--2731Chr03:31037037..31037061 (25 bp)
AAGCAACGCCAAGGTAGCGGTACAA
LOC_Os03g54220
Os.52485.1.S1_at--541--8051Chr03:31036998..31037022 (25 bp)
GGAGATCCGTCCTGATGAATCTGAA
LOC_Os03g54220
Os.52485.1.S1_at--1004--3591Chr03:31036905..31036929 (25 bp)
CTTGGTGGCCAAGCGTCGGTCGTCA
LOC_Os03g54220
Os.52485.1.S1_at--1013--7791Chr03:31036888..31036912 (25 bp)
GGTCGTCAAGGCCTATCAAGCCCAA
LOC_Os03g54220
Os.52485.1.S1_at--573--2611Chr03:31036865..31036889 (25 bp)
AACCCACGTTATCAAGTCTCTCAAT
LOC_Os03g54220
Os.52485.1.S1_at--153--3231Chr03:31036853..31036877 (25 bp)
CAAGTCTCTCAATGGGTTGCGTAAA
LOC_Os03g54220
Os.52485.1.S1_at--322--1251Chr03:31036826..31036850 (25 bp)
AGTTGTCGTTGTAACAGCCTGGCTC
LOC_Os03g54220
Os.52485.1.S1_at--720--7271Chr03:31036800..31036824 (25 bp)
GTCCAGCTGGCGATGTATCACGTGA
LOC_Os03g54220
Target Sequence 
CAAGGGATTCAAGGCCCCTGTTCAGCCCCTTCTGCCACCCCACATGCCTTCTATACAGCATCCTTTGACTAGCAAGCAAC
CTGGGAAGACCTTGAAGATTTGAAGACAAGGTTTCCTGGACTTCCTGCTTGGGGACAAGCAGGCTTTCAAGGGGTAGGGA
TTGTCAGGAACACGCCAAGCAACGCCAAGGTAGCGGTACAAAAAGATACAGAAGAGGAGATCCGTCCTGATGAATCTGAA
GAGCAAGAGGAAGAAGCTGAAGCTCCAGTGGAGAGCGATGGCGCGAAGCAAGGAGGAGGAGAACAAGACTTGGTGGCCAA
GCGTCGGTCGTCAAGGCCTATCAAGCCCAACCCACGTTATCAAGTCTCTCAATGGGTTGCGTAAAGCAGTTGTCGTTGTA
ACAGCCTGGCTCTGTCCAGCTGGCGATGTATCACGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52485.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis