Browse Element(s) Details


Os.49363.3.S1_at

Description gb:AK067890.1
DB_XREF= gi:32977908
TID=Os.49363.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49363 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033117C13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013128J06, full insert sequence.
FL= gb:AK067890.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5424011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54200Os.7237.1.S1_a_at11/113+31028016..31030309expressed protein
LOC_Os03g54210OsAffx.25712.1.S1_at11/113+31031792..31032259hypothetical protein
LOC_Os03g54220Os.23317.1.S1_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.52485.1.S1_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.23317.1.S2_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.49341.1.S1_x_at5/113+31033044..31037646expressed protein
LOC_Os03g54220Os.51537.1.S1_at1/113+31033044..31037646expressed protein
LOC_Os03g54230OsAffx.13488.1.S1_at11/113+31041615..31042091Imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative
LOC_Os03g54240Os.49363.3.S1_at11/113+31044663..31047885expressed protein
LOC_Os03g54240Os.49363.1.S1_x_at10/113+31044663..31047885expressed protein
LOC_Os03g54244NANA3+31059931..31063555retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g54750NANA3+31064096..31065916COBRA-like protein 4 precursor, putative, expressed
LOC_Os03g54760Os.14445.1.S1_at11/113+31069119..31072602Mitochondrial carrier protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49363.3.S1_at--857--4391Chr03:31046395..31046650 (25 bp)
GCCAACGTTGTTGTGAGTGTCATCG
LOC_Os03g54240
Os.49363.3.S1_at--298--2591Chr03:31046398..31046653 (25 bp)
AACGTTGTTGTGAGTGTCATCGAGG
LOC_Os03g54240
Os.49363.3.S1_at--948--10811Chr03:31046640..31046660 (21 bp)
TTGTGAGTGTCATCGAGGTGAAGCT
LOC_Os03g54240
Os.49363.3.S1_at--671--7331Chr03:31046673..31046697 (25 bp)
GTGCATCAATGATGATTGCGCTTAT
LOC_Os03g54240
Os.49363.3.S1_at--617--8871Chr03:31046682..31046706 (25 bp)
TGATGATTGCGCTTATATTCCCAAG
LOC_Os03g54240
Os.49363.3.S1_at--434--6591Chr03:31046686..31046710 (25 bp)
GATTGCGCTTATATTCCCAAGCTGC
LOC_Os03g54240
Os.49363.3.S1_at--93--10711Chr03:31046688..31046712 (25 bp)
TTGCGCTTATATTCCCAAGCTGCAG
LOC_Os03g54240
Os.49363.3.S1_at--497--4891Chr03:31046692..31046716 (25 bp)
GCTTATATTCCCAAGCTGCAGCTAC
LOC_Os03g54240
Os.49363.3.S1_at--227--10191Chr03:31046695..31046719 (25 bp)
TATATTCCCAAGCTGCAGCTACGAG
LOC_Os03g54240
Os.49363.3.S1_at--921--91Chr03:31046698..31046722 (25 bp)
ATTCCCAAGCTGCAGCTACGAGCAT
LOC_Os03g54240
Os.49363.3.S1_at--778--4171Chr03:31046701..31046725 (25 bp)
CCCAAGCTGCAGCTACGAGCATTGG
LOC_Os03g54240
Target Sequence 
GCCAACGTTGTTGTGAGTGTCATCGAGGTGAAGCTTGGCAAGCTCAAGTGCATCAATGATGATTGCGCTTATATTCCCAA
GCTGCAGCTACGAGCATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49363.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis