Browse Element(s) Details


Os.14445.1.S1_at

Description gb:AK101584.1
DB_XREF= gi:32986793
TID=Os.14445.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14445 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033050O16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050O16, full insert sequence.
FL= gb:AK101584.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5476011/11Mitochondrial carrier protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54240Os.49363.3.S1_at11/113+31044663..31047885expressed protein
LOC_Os03g54240Os.49363.1.S1_x_at10/113+31044663..31047885expressed protein
LOC_Os03g54244NANA3+31059931..31063555retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g54750NANA3+31064096..31065916COBRA-like protein 4 precursor, putative, expressed
LOC_Os03g54760Os.14445.1.S1_at11/113+31069119..31072602Mitochondrial carrier protein, putative, expressed
LOC_Os03g54770Os.49335.1.S1_x_at11/113+31073418..31078660Cleavage stimulation factor, 50 kDa subunit, putative, expressed
LOC_Os03g54780Os.18618.1.S1_at11/113+31078999..31087917Serine/threonine kinase, putative, expressed
LOC_Os03g54790Os.37742.1.S1_at11/113+31088889..31094229ABC transporter transmembrane region family protein, expressed
LOC_Os03g54804OsAffx.19542.3.S1_x_at6/113+31097020..31102797retrotransposon protein, putative, unclassified, expressed
LOC_Os03g54804OsAffx.13489.1.S1_at1/113+31097020..31102797retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14445.1.S1_at--641--7791Chr03:31071719..31071743 (25 bp)
GGTCCAAGATTTTTCAGCTCATCAG
LOC_Os03g54760
Os.14445.1.S1_at--315--311Chr03:31071775..31072154 (25 bp)
ATACCTAAAGCGCTTGTGTGCTAAA
LOC_Os03g54760
Os.14445.1.S1_at--743--9691Chr03:31072185..31072209 (25 bp)
TCACTCTGATGCTCGCAGTGGTGGA
LOC_Os03g54760
Os.14445.1.S1_at--212--8771Chr03:31072237..31072261 (25 bp)
TGTATGCCAACAACTGTGACCCATG
LOC_Os03g54760
Os.14445.1.S1_at--246--1591Chr03:31072266..31072290 (25 bp)
AGCTCTCTTTCTTGCTGACTTGATA
LOC_Os03g54760
Os.14445.1.S1_at--1060--7311Chr03:31072312..31072336 (25 bp)
GTGCTCTTGAGGCTATTTTGAAAAT
LOC_Os03g54760
Os.14445.1.S1_at--512--7891Chr03:31072342..31072366 (25 bp)
GGTTCATATTGTTTGCCTCTAACGA
LOC_Os03g54760
Os.14445.1.S1_at--201--10391Chr03:31072428..31072452 (25 bp)
TTTTCATTCTTTTTAGCTCCAGCCT
LOC_Os03g54760
Os.14445.1.S1_at--190--1691Chr03:31072448..31072472 (25 bp)
AGCCTCCAGGGCTTGTAATAGTGAG
LOC_Os03g54760
Os.14445.1.S1_at--719--331Chr03:31072519..31072543 (25 bp)
ATACATTTGCTCGTTTCTCTTCGAT
LOC_Os03g54760
Os.14445.1.S1_at--233--10471Chr03:31072573..31072597 (25 bp)
TTACGATGGTGCTGGTCTTCGTTTT
LOC_Os03g54760
Target Sequence 
GGTCCAAGATTTTTCAGCTCATCAGCTTGGGGTACCTCAATGATAGTATGCTATGAATACCTAAAGCGCTTGTGTGCTAA
AGTTGAAGAGGTCTGAGTCAGCTTAAACNTATCACTCTGATGCTCGCAGTGGTGGAAATTTTGTAGCAAAAATCCAATAA
TGCTGTATGCCAACAACTGTGACCCATGAGGANNNAGCTCTCTTTCTTGCTGACTTGATACTAGATATCTTTAAAATTTT
AGTGCTCTTGAGGCTATTTTGAAAATGCAGAGGTTCATATTGTTTGCCTCTAACGATGAATATGGATTAGGCAGAATGTT
TTACATGATATATAAACGAAAGATTAGATATGTTCACTTTTCATTCTTTTTAGCTCCAGCCTCCAGGGCTTGTAATAGTG
AGACCGGAGTATTGGAACCGGTTTCAGTGAGGAGGAGCAAGGATATATATACATTTGCTCGTTTCTCTTCGATGTACTCN
AAATATCNTTCTTCGAATTTTTTTACGATGGTGCTGGTCTTCGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis