Browse Element(s) Details


Os.18618.1.S1_at

Description gb:AK068540.1
DB_XREF= gi:32978557
TID=Os.18618.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18618 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013155F13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155F13, full insert sequence.
FL= gb:AK068540.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5478011/11Serine/threonine kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54244NANA3+31059931..31063555retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g54750NANA3+31064096..31065916COBRA-like protein 4 precursor, putative, expressed
LOC_Os03g54760Os.14445.1.S1_at11/113+31069119..31072602Mitochondrial carrier protein, putative, expressed
LOC_Os03g54770Os.49335.1.S1_x_at11/113+31073418..31078660Cleavage stimulation factor, 50 kDa subunit, putative, expressed
LOC_Os03g54780Os.18618.1.S1_at11/113+31078999..31087917Serine/threonine kinase, putative, expressed
LOC_Os03g54790Os.37742.1.S1_at11/113+31088889..31094229ABC transporter transmembrane region family protein, expressed
LOC_Os03g54804OsAffx.19542.3.S1_x_at6/113+31097020..31102797retrotransposon protein, putative, unclassified, expressed
LOC_Os03g54804OsAffx.13489.1.S1_at1/113+31097020..31102797retrotransposon protein, putative, unclassified, expressed
LOC_Os03g54820NANA3+31104635..31105630hypothetical protein
LOC_Os03g54830OsAffx.3607.1.S1_at11/113+31107498..31107959hypothetical protein
LOC_Os03g54840OsAffx.25713.1.S1_at11/113+31112335..31113841hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000775cellular_componentchromosome, pericentric region
GO:0005634cellular_componentnucleus
GO:0005694cellular_componentchromosome
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005819cellular_componentspindle
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18618.1.S1_at--889--6591Chr03:31087226..31087250 (25 bp)
GATTGACCACAAGTCCCACATTGAT
LOC_Os03g54780
Os.18618.1.S1_at--900--4531Chr03:31087264..31087286 (23 bp)
GCCCTTGCTTACCACAAAACGTGTT
LOC_Os03g54780
Os.18618.1.S1_at--254--8131Chr03:31087393..31087417 (25 bp)
GGACATGCCTCTGCAAGATTCGCAA
LOC_Os03g54780
Os.18618.1.S1_at--785--10811Chr03:31087450..31087474 (25 bp)
TTGTGATACACTTCGAACCATCCTG
LOC_Os03g54780
Os.18618.1.S1_at--408--5991Chr03:31087474..31087498 (25 bp)
GAGACTCTAGTCTGTGGACATGCAT
LOC_Os03g54780
Os.18618.1.S1_at--621--5491Chr03:31087528..31087552 (25 bp)
GAACATCGAAATGCTGCGCCGAGTA
LOC_Os03g54780
Os.18618.1.S1_at--546--10231Chr03:31087563..31087587 (25 bp)
TTTGGCTTCTCAATTTGATGCCGAG
LOC_Os03g54780
Os.18618.1.S1_at--669--491Chr03:31087588..31087612 (25 bp)
ATCGATCCGGCCAGTGTGTAGGGTA
LOC_Os03g54780
Os.18618.1.S1_at--400--3011Chr03:31087658..31087682 (25 bp)
AATGCTGACGGAGCTTGCCATTAGC
LOC_Os03g54780
Os.18618.1.S1_at--641--6051Chr03:31087793..31087817 (25 bp)
GAGATTGCATTCGACCTTTTGCTAA
LOC_Os03g54780
Os.18618.1.S1_at--955--7751Chr03:31087838..31087862 (25 bp)
GGTGACGTGTACTCAGGCTTTGTAT
LOC_Os03g54780
Target Sequence 
GATTGACCACAAGTCCCACATTGATGAACCTGGCCCAAGCCCTTGCTTACCACAAAACGTGTTACGAGGACATGCCTCTG
CAAGATTCGCAAGCAACGCAAGAGCAGCAGACAATACAGAACCTTTGTGATACACTTCGAACCATCCTGAGACTCTAGTC
TGTGGACATGCATGAGTAAAAGATACGACCTTGGAGCATTTCGAACATCGAAATGCTGCGCCGAGTAAAGGGCTGATTTT
GGCTTCTCAATTTGATGCCGAGATCGATCCGGCCAGTGTGTAGGGTAAGTCTGTAACCAAAAGCAGGCACGGCATAGTGC
GTACTGCAGAACAATGCTGACGGAGCTTGCCATTAGCTTATAGATGCTGGGTGACCTTGAAGCTGGATAGGCGGAAGGAA
TTCCTGTTTTGGAGATGGAAATTTTGTCTGATGTTAATAGCAGGTATTTATGTGGGCAGTGTATGTAGAGATTGCATTCG
ACCTTTTGCTAATCAAATTTTGCGGCTCAAATGGTGACGTGTACTCAGGCTTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis