Browse Element(s) Details


OsAffx.25713.1.S1_at

Description tigr:9631.m05340
TID=OsAffx.25713.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5484011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54780Os.18618.1.S1_at11/113+31078999..31087917Serine/threonine kinase, putative, expressed
LOC_Os03g54790Os.37742.1.S1_at11/113+31088889..31094229ABC transporter transmembrane region family protein, expressed
LOC_Os03g54804OsAffx.19542.3.S1_x_at6/113+31097020..31102797retrotransposon protein, putative, unclassified, expressed
LOC_Os03g54804OsAffx.13489.1.S1_at1/113+31097020..31102797retrotransposon protein, putative, unclassified, expressed
LOC_Os03g54820NANA3+31104635..31105630hypothetical protein
LOC_Os03g54830OsAffx.3607.1.S1_at11/113+31107498..31107959hypothetical protein
LOC_Os03g54840OsAffx.25713.1.S1_at11/113+31112335..31113841hypothetical protein
LOC_Os03g54850OsAffx.25714.1.S1_at11/113+31115593..31117971expressed protein
LOC_Os03g54850OsAffx.25714.2.S1_s_at1/113+31115593..31117971expressed protein
LOC_Os03g54860Os.47351.1.S1_at1/113+31127718..3112950260S ribosomal protein L13a-2, putative
LOC_Os03g54870OsAffx.25714.2.S1_s_at11/113+31130796..31133330expressed protein
LOC_Os03g54870OsAffx.25714.1.S1_at11/113+31130796..31133330expressed protein
LOC_Os03g54880Os.37742.1.S1_at6/113+31136383..31136978ATP-binding cassette sub-family B member 8, mitochondrial precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25713.1.S1_at--279--3391Chr03:31112509..31112533 (25 bp)
CAGCGTCGGCTGAGTGAAGTGCCTA
LOC_Os03g54840
OsAffx.25713.1.S1_at--32--7351Chr03:31112522..31112546 (25 bp)
GTGAAGTGCCTAGAGGATCCTCGCC
LOC_Os03g54840
OsAffx.25713.1.S1_at--375--4151Chr03:31112549..31112573 (25 bp)
CGCCGTCGTCGGTCTCTAGGAGTCA
LOC_Os03g54840
OsAffx.25713.1.S1_at--960--4011Chr03:31112555..31112579 (25 bp)
CGTCGGTCTCTAGGAGTCAGGCGAA
LOC_Os03g54840
OsAffx.25713.1.S1_at--901--3471Chr03:31112572..31112596 (25 bp)
CAGGCGAAGGCTGTGGCACCGACTT
LOC_Os03g54840
OsAffx.25713.1.S1_at--315--7831Chr03:31112606..31112630 (25 bp)
GGTCACCACGCACAGCGCAGGATGA
LOC_Os03g54840
OsAffx.25713.1.S1_at--653--3351Chr03:31112612..31112636 (25 bp)
CACGCACAGCGCAGGATGAACCATG
LOC_Os03g54840
OsAffx.25713.1.S1_at--491--991Chr03:31112624..31112648 (25 bp)
AGGATGAACCATGGCGACGTGACTT
LOC_Os03g54840
OsAffx.25713.1.S1_at--997--3491Chr03:31112633..31112657 (25 bp)
CATGGCGACGTGACTTCGGCAATGA
LOC_Os03g54840
OsAffx.25713.1.S1_at--276--3011Chr03:31113539..31113563 (25 bp)
AATGAAGATCCTAGTTTCTCGAGAG
LOC_Os03g54840
OsAffx.25713.1.S1_at--1094--6131Chr03:31113561..31113585 (25 bp)
GAGGTGTTTGCATTGCCTGTAAAAT
LOC_Os03g54840
Target Sequence 
CAGCGTCGGCTGAGTGAAGTGCCTAGAGGATCCTCGCCGTCGCCGTCGTCGGTCTCTAGGAGTCAGGCGAAGGCTGTGGC
ACCGACTTCGCGGGCGCGGTCACCACGCACAGCGCAGGATGAACCATGGCGACGTGACTTCGGCAATGAGGCCGGCGTGG
ATGCCGACGTTGACGCCGACGAGAACGGGTCAAGGCGATGCGGAAGAAATGAAGATCCTAGTTTCTCGAGAGGTGTTTGC
ATTGCCTGTAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25713.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis