Browse Element(s) Details


Os.37742.1.S1_at

Description gb:AK066049.1
DB_XREF= gi:32976067
TID=Os.37742.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37742 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013049O12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049O12, full insert sequence.
FL= gb:AK066049.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5479011/11ABC transporter transmembrane region family protein, expressed
LOC_Os03g548806/11ATP-binding cassette sub-family B member 8, mitochondrial precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54750NANA3+31064096..31065916COBRA-like protein 4 precursor, putative, expressed
LOC_Os03g54760Os.14445.1.S1_at11/113+31069119..31072602Mitochondrial carrier protein, putative, expressed
LOC_Os03g54770Os.49335.1.S1_x_at11/113+31073418..31078660Cleavage stimulation factor, 50 kDa subunit, putative, expressed
LOC_Os03g54780Os.18618.1.S1_at11/113+31078999..31087917Serine/threonine kinase, putative, expressed
LOC_Os03g54790Os.37742.1.S1_at11/113+31088889..31094229ABC transporter transmembrane region family protein, expressed
LOC_Os03g54804OsAffx.19542.3.S1_x_at6/113+31097020..31102797retrotransposon protein, putative, unclassified, expressed
LOC_Os03g54804OsAffx.13489.1.S1_at1/113+31097020..31102797retrotransposon protein, putative, unclassified, expressed
LOC_Os03g54820NANA3+31104635..31105630hypothetical protein
LOC_Os03g54830OsAffx.3607.1.S1_at11/113+31107498..31107959hypothetical protein
LOC_Os03g54840OsAffx.25713.1.S1_at11/113+31112335..31113841hypothetical protein
LOC_Os03g54850OsAffx.25714.1.S1_at11/113+31115593..31117971expressed protein
LOC_Os03g54850OsAffx.25714.2.S1_s_at1/113+31115593..31117971expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008361biological_processregulation of cell size
GO:0009637biological_processresponse to blue light
GO:0009639biological_processresponse to red or far red light
GO:0009640biological_processphotomorphogenesis
GO:0009733biological_processresponse to auxin stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009926biological_processauxin polar transport
GO:0009958biological_processpositive gravitropism
GO:0043481biological_processanthocyanin accumulation in tissues in response to UV light
GO:0005739cellular_componentmitochondrion
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0008559molecular_functionxenobiotic-transporting ATPase activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37742.1.S1_at--717--7311Chr03:31093434..31093458 (25 bp)
GTGCTCCTCTTGGATGAAGCTACCA
LOC_Os03g54790
Os.37742.1.S1_at--29--5411Chr03:31093449..31093473 (25 bp)
GAAGCTACCAGTGCACTAGACGCTG
LOC_Os03g54790
Os.37742.1.S1_at--921--972Chr03:31093689..31093713 (25 bp)
AGGATGCAATGGACTCTCTGATGAA
LOC_Os03g54790
Os.37742.1.S1_at--249--971Chr03:31093718..31093742 (25 bp)
AGGACCGTGCTTGTGATAGCTCACC
LOC_Os03g54790
Os.37742.1.S1_at--499--5152Chr03:31093901..31093925 (25 bp)
GCAACAGCCGAGATAGAACCCATAA
LOC_Os03g54790
Os.37742.1.S1_at--284--312Chr03:31093946..31093970 (25 bp)
ATAGCCTCTTCTGCATAGTACTTGA
LOC_Os03g54790
Os.37742.1.S1_at--33--6993Chr05:16440236..16440319 (24 bp)
GTACTTGATTTTTGTCCCTTCTCCG
NONE
Os.37742.1.S1_at--99--1792Chr03:31093999..31094023 (25 bp)
ACCGTTTCCTGATGATCCACTGAAT
LOC_Os03g54790
Os.37742.1.S1_at--539--112Chr03:31094088..31094112 (25 bp)
ATTCTAATTGTCACGAGCTGCTGCT
LOC_Os03g54790
Os.37742.1.S1_at--629--4772Chr03:31094104..31094128 (25 bp)
GCTGCTGCTGTGTCTTACACAATTA
LOC_Os03g54790
Os.37742.1.S1_at--118--232Chr03:31094205..31094229 (25 bp)
ATATTGTGTTGCTTGATTGCTTCTC
LOC_Os03g54790
Target Sequence 
GTGCTCCTCTTGGATGAAGCTACCAGTGCACTAGACGCTGAAAGCGAGTATCTTGTTCAGGATGCAATGGACTCTCTGAT
GAAAGGGAGGACCGTGCTTGTGATAGCTCACCGGCTATCCACCGTCAAGAGCGCCGACACCGTCGCCGTCATCTCCGACG
GCCAGATAGTGGAGAGCGGCACGCANGACGAGCTCCTCAGCCGCGACGGCATNTACACGGCCTTGGTGAAGAGGCAGCTG
CAAGGGCCAAGGTTCGAAGGCACCAGCAANGCAACAGCCGAGATAGAACCCATAAGCAATGGCCAATAGACAAATATAGC
CTCTTCTGCATAGTACTTGATTTTTGTCCCTTCTCCGGGCAGGTGGACACCGTTTCCTGATGATCCACTGAATGTAAACG
GATANGAATGCATCCACTCTGAAAATGCCACGCAGTCCCGCACAACAGTACAAACACATTCTAATTGTCACGAGCTGCTG
CTGTGTCTTACACAATTAACTCGCTTATTTTTTTATAGAATGTAATTATGCCTTGATGGCGTGATGTTGCGCGGATGGGT
AATGACCGCAATCAATATTGTGTTGCTTGATTGCTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37742.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis