Browse Element(s) Details


OsAffx.25714.2.S1_s_at

Description tigr:9631.m05343
TID=OsAffx.25714.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5487011/11expressed protein
LOC_Os03g548501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54830OsAffx.3607.1.S1_at11/113+31107498..31107959hypothetical protein
LOC_Os03g54840OsAffx.25713.1.S1_at11/113+31112335..31113841hypothetical protein
LOC_Os03g54850OsAffx.25714.1.S1_at11/113+31115593..31117971expressed protein
LOC_Os03g54850OsAffx.25714.2.S1_s_at1/113+31115593..31117971expressed protein
LOC_Os03g54860Os.47351.1.S1_at1/113+31127718..3112950260S ribosomal protein L13a-2, putative
LOC_Os03g54870OsAffx.25714.2.S1_s_at11/113+31130796..31133330expressed protein
LOC_Os03g54870OsAffx.25714.1.S1_at11/113+31130796..31133330expressed protein
LOC_Os03g54880Os.37742.1.S1_at6/113+31136383..31136978ATP-binding cassette sub-family B member 8, mitochondrial precursor, putative
LOC_Os03g54890Os.12202.1.S1_at11/113+31142265..3114434060S ribosomal protein L13a-2, putative, expressed
LOC_Os03g54890Os.47351.1.S1_at1/113+31142265..3114434060S ribosomal protein L13a-2, putative, expressed
LOC_Os03g54900Os.46774.1.S1_at11/113+31146033..31151362Leucine Rich Repeat family protein, expressed
LOC_Os03g54910Os.9502.1.S1_at10/113+31155353..31157769expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25714.2.S1_s_at--53--4552Chr03:31117928..31117952 (25 bp)
GCCCTGGTGGAGATCTTCGTGTTTA
LOC_Os03g54850
OsAffx.25714.2.S1_s_at--505--9571Chr03:31130904..31130928 (25 bp)
TCTTCGTGTTTATCTGGAGAACCTC
LOC_Os03g54870
OsAffx.25714.2.S1_s_at--429--6811Chr03:31130897..31130921 (25 bp)
GTTTATCTGGAGAACCTCACAGTTG
LOC_Os03g54870
OsAffx.25714.2.S1_s_at--239--8071Chr03:31130889..31130913 (25 bp)
GGAGAACCTCACAGTTGCAGAAGAT
LOC_Os03g54870
OsAffx.25714.2.S1_s_at--405--1751Chr03:31130884..31130908 (25 bp)
ACCTCACAGTTGCAGAAGATGTCGA
LOC_Os03g54870
OsAffx.25714.2.S1_s_at--25--2811Chr03:31130869..31130893 (25 bp)
AAGATGTCGAGTGCTACGTTCGCAA
LOC_Os03g54870
OsAffx.25714.2.S1_s_at--562--6111Chr03:31130861..31130885 (25 bp)
GAGTGCTACGTTCGCAACAATCCAT
LOC_Os03g54870
OsAffx.25714.2.S1_s_at--599--4851Chr03:31130857..31130881 (25 bp)
GCTACGTTCGCAACAATCCATTTGG
LOC_Os03g54870
OsAffx.25714.2.S1_s_at--732--5131Chr03:31130848..31130872 (25 bp)
GCAACAATCCATTTGGCCAACCTTT
LOC_Os03g54870
OsAffx.25714.2.S1_s_at--1102--211Chr03:31130838..31130862 (25 bp)
ATTTGGCCAACCTTTCATCACACAG
LOC_Os03g54870
OsAffx.25714.2.S1_s_at--927--4391Chr03:31130833..31130857 (25 bp)
GCCAACCTTTCATCACACAGAGTGA
LOC_Os03g54870
Target Sequence 
GCCCTGGTGGAGATCTTCGTGTTTATCTGGAGAACCTCACAGTTGCAGAAGATGTCGAGTGCTACGTTCGCAACAATCCA
TTTGGCCAACCTTTCATCACACAGAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25714.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis