Browse Element(s) Details


Os.12202.1.S1_at

Description gb:AK106078.1
DB_XREF= gi:32991287
TID=Os.12202.1
CNT=45
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12202 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-207-A04, full insert sequence.
FL= gb:AK106078.1 gb:AK103893.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5489011/1160S ribosomal protein L13a-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54850OsAffx.25714.1.S1_at11/113+31115593..31117971expressed protein
LOC_Os03g54850OsAffx.25714.2.S1_s_at1/113+31115593..31117971expressed protein
LOC_Os03g54860Os.47351.1.S1_at1/113+31127718..3112950260S ribosomal protein L13a-2, putative
LOC_Os03g54870OsAffx.25714.2.S1_s_at11/113+31130796..31133330expressed protein
LOC_Os03g54870OsAffx.25714.1.S1_at11/113+31130796..31133330expressed protein
LOC_Os03g54880Os.37742.1.S1_at6/113+31136383..31136978ATP-binding cassette sub-family B member 8, mitochondrial precursor, putative
LOC_Os03g54890Os.12202.1.S1_at11/113+31142265..3114434060S ribosomal protein L13a-2, putative, expressed
LOC_Os03g54890Os.47351.1.S1_at1/113+31142265..3114434060S ribosomal protein L13a-2, putative, expressed
LOC_Os03g54900Os.46774.1.S1_at11/113+31146033..31151362Leucine Rich Repeat family protein, expressed
LOC_Os03g54910Os.9502.1.S1_at10/113+31155353..31157769expressed protein
LOC_Os03g54920OsAffx.13490.1.S1_at11/113+31159621..31162675expressed protein
LOC_Os03g54920Os.10970.1.S1_at10/113+31159621..31162675expressed protein
LOC_Os03g54930OsAffx.3609.1.S1_at11/113+31164464..31170865Leo1
LOC_Os03g54930Os.36267.1.S1_s_at1/113+31164464..31170865Leo1

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12202.1.S1_at--621--1491Chr03:31143905..31143929 (25 bp)
AGCAACTGGCGAAGCTGCGTGTCAA
LOC_Os03g54890
Os.12202.1.S1_at--95--1631Chr03:31143965..31143989 (25 bp)
AGCTGGAGATTCTTGCTCCGATCAA
LOC_Os03g54890
Os.12202.1.S1_at--505--1451Chr03:31143996..31144020 (25 bp)
AGAAGCTTTGCTTTCGTGCATCATC
LOC_Os03g54890
Os.12202.1.S1_at--144--2371Chr03:31144091..31144115 (25 bp)
AAACCGTTGTTATGCATCCCAGTTC
LOC_Os03g54890
Os.12202.1.S1_at--612--4351Chr03:31144109..31144133 (25 bp)
CCAGTTCTGCTACTCCTATTTGAAA
LOC_Os03g54890
Os.12202.1.S1_at--878--7211Chr03:31144141..31144165 (25 bp)
GTCGATGAACTGTTTCTGTTTGTCA
LOC_Os03g54890
Os.12202.1.S1_at--15--8051Chr03:31144179..31144203 (25 bp)
GGAGATTCTACCGATGGCTGTCATA
LOC_Os03g54890
Os.12202.1.S1_at--740--3651Chr03:31144229..31144253 (25 bp)
CTTAACTTATTTGCCCTTGTTGAGC
LOC_Os03g54890
Os.12202.1.S1_at--308--5891Chr03:31144250..31144274 (25 bp)
GAGCGTCCGTCTGCAAGTTTATGTT
LOC_Os03g54890
Os.12202.1.S1_at--1062--5731Chr03:31144293..31144317 (25 bp)
GACTGGATGTAATGCGTGTGCTTTA
LOC_Os03g54890
Os.12202.1.S1_at--911--10151Chr03:31144316..31144340 (25 bp)
TATCTCAGCAAGTTCCAGTGCGTTC
LOC_Os03g54890
Target Sequence 
AGCAACTGGCGAAGCTGCGTGTCAAGGCTGAGAAGGCAGCCGAGGAGAAGCTGGGTCCTCAGCTGGAGATTCTTGCTCCG
ATCAAATACTGAGAAGCTTTGCTTTCGTGCATCATCAGTTTTGTGAAACATGTGCCCCCTTATTCCTAGTAGTATGGTGA
CTCATGATAGTACAATCAAGGTGTTTAAACCGTTGTTATGCATCCCAGTTCTGCTACTCCTATTTGAAATTTTCTAGTCG
ATGAACTGTTTCTGTTTGTCAAATGTGTGCATTTGGAGATTCTACCGATGGCTGTCATAGTCCCATATTGACAAAGCGGT
TTTTCTTAACTTATTTGCCCTTGTTGAGCGTCCGTCTGCAAGTTTATGTTGATTATTTTTCTGGTTAAGACTGGATGTAA
TGCGTGTGCTTTATCTCAGCAAGTTCCAGTGCGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis