Browse Element(s) Details


OsAffx.3609.1.S1_at

Description tigr:9631.m05351
TID=OsAffx.3609.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative Paf1RNA polymerase II complex protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5493011/11Leo1
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54890Os.12202.1.S1_at11/113+31142265..3114434060S ribosomal protein L13a-2, putative, expressed
LOC_Os03g54890Os.47351.1.S1_at1/113+31142265..3114434060S ribosomal protein L13a-2, putative, expressed
LOC_Os03g54900Os.46774.1.S1_at11/113+31146033..31151362Leucine Rich Repeat family protein, expressed
LOC_Os03g54910Os.9502.1.S1_at10/113+31155353..31157769expressed protein
LOC_Os03g54920OsAffx.13490.1.S1_at11/113+31159621..31162675expressed protein
LOC_Os03g54920Os.10970.1.S1_at10/113+31159621..31162675expressed protein
LOC_Os03g54930OsAffx.3609.1.S1_at11/113+31164464..31170865Leo1
LOC_Os03g54930Os.36267.1.S1_s_at1/113+31164464..31170865Leo1
LOC_Os03g54950Os.28943.1.S1_x_at2/113+31175400..31178099retrotransposon protein, putative, unclassified
LOC_Os03g54960NANA3+31178916..31184684retrotransposon protein, putative, unclassified
LOC_Os03g54970OsAffx.25715.1.S1_at10/113+31189616..31193242expressed protein
LOC_Os03g54980Os.2906.1.S1_at10/113+31194901..31198079UPF0139 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0010048biological_processvernalization response
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3609.1.S1_at--773--10191Chr03:31166350..31166374 (25 bp)
TATTCGAGCTAGTTCAAGTCTTCAA
LOC_Os03g54930
OsAffx.3609.1.S1_at--1019--1611Chr03:31166306..31166330 (25 bp)
AGCGCAAATACAGTCAGCCTCTTAG
LOC_Os03g54930
OsAffx.3609.1.S1_at--997--4851Chr03:31166269..31166293 (25 bp)
GCTTACCCCAGGTTTTCTGGAAGAT
LOC_Os03g54930
OsAffx.3609.1.S1_at--889--10771Chr03:31165479..31165503 (25 bp)
TTGGTTATAATCAGCGCCGAGGCCC
LOC_Os03g54930
OsAffx.3609.1.S1_at--395--4551Chr03:31165458..31165482 (25 bp)
GCCCAGGCCATGCACATTTTGAGGA
LOC_Os03g54930
OsAffx.3609.1.S1_at--999--7991Chr03:31165427..31165451 (25 bp)
GGAGGCTGAAGCACTTTCTAAGAGA
LOC_Os03g54930
OsAffx.3609.1.S1_at--214--3471Chr03:31165280..31165304 (25 bp)
CAGTGTACCCAAGCATCAGGTGAAT
LOC_Os03g54930
OsAffx.3609.1.S1_at--1143--271Chr03:31165132..31165156 (25 bp)
ATAGGTGATACTTCCATGTCAGATG
LOC_Os03g54930
OsAffx.3609.1.S1_at--464--5131Chr03:31164531..31164555 (25 bp)
GCAAAGGGTTCAACTCTGACGACGA
LOC_Os03g54930
OsAffx.3609.1.S1_at--26--3731Chr03:31164516..31164540 (25 bp)
CTGACGACGAATCTCCACCAAGGAA
LOC_Os03g54930
OsAffx.3609.1.S1_at--33--8171Chr03:31164495..31164519 (25 bp)
GGAAACAGCCTCTTAATCGTAGAAA
LOC_Os03g54930
Target Sequence 
TATTCGAGCTAGTTCAAGTCTTCAACGAAAAAGAGAACAGGTGAAGCGCAAATACAGTCAGCCTCTTAGGAAAAGGCGGA
AGCTTACCCCAGGTTTTCTGGAAGATGCATTAGAGGAGGATGAGGCACCTGGTGTTGGTTATAATCAGCGCCGAGGCCCA
GGCCATGCACATTTTGAGGATAGCTTGGAGGCTGAAGCACTTTCTAAGAGACACGTAACTAATGCAAAGAAGGCAAATGT
AGGGAAAGCTGTTCCTTCTCCCAGTGTACCCAAGCATCAGGTGAATGAGTATTCCAAGAGTGAAAGTGAGGAATCAGAGT
ATGAAACAGATGTCGAGGATATAGATAATTCACCAACAAATGGAAGGGAAGATGACATGGATGAAGAGGAAGAAGACCCA
GAAGAAGTCATAGGTGATACTTCCATGTCAGATGAAAATAATGAGGAACAAGAGCATGTAAAGGAGCGCAAAGGGTTCAA
CTCTGACGACGAATCTCCACCAAGGAAACAGCCTCTTAATCGTAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3609.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis