Browse Element(s) Details


Os.10970.1.S1_at

Description gb:AK099399.1
DB_XREF= gi:32984608
TID=Os.10970.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10970 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000O17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000O17, full insert sequence.
FL= gb:AK099399.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5492010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54880Os.37742.1.S1_at6/113+31136383..31136978ATP-binding cassette sub-family B member 8, mitochondrial precursor, putative
LOC_Os03g54890Os.12202.1.S1_at11/113+31142265..3114434060S ribosomal protein L13a-2, putative, expressed
LOC_Os03g54890Os.47351.1.S1_at1/113+31142265..3114434060S ribosomal protein L13a-2, putative, expressed
LOC_Os03g54900Os.46774.1.S1_at11/113+31146033..31151362Leucine Rich Repeat family protein, expressed
LOC_Os03g54910Os.9502.1.S1_at10/113+31155353..31157769expressed protein
LOC_Os03g54920OsAffx.13490.1.S1_at11/113+31159621..31162675expressed protein
LOC_Os03g54920Os.10970.1.S1_at10/113+31159621..31162675expressed protein
LOC_Os03g54930OsAffx.3609.1.S1_at11/113+31164464..31170865Leo1
LOC_Os03g54930Os.36267.1.S1_s_at1/113+31164464..31170865Leo1
LOC_Os03g54950Os.28943.1.S1_x_at2/113+31175400..31178099retrotransposon protein, putative, unclassified
LOC_Os03g54960NANA3+31178916..31184684retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10970.1.S1_at--1050--5611Chr03:31160402..31160516 (25 bp)
GACAGGTTACCTGCAAAACCAGCAT
LOC_Os03g54920
Os.10970.1.S1_at--188--10251Chr03:31160211..31160321 (25 bp)
TTTGGTTTATGGTTGTACAATCTCA
LOC_Os03g54920
Os.10970.1.S1_at--357--7051Chr03:31159811..31159835 (25 bp)
GTAAACAACCGTTATAATCAAATGA
LOC_Os03g54920
Os.10970.1.S1_at--613--611Chr03:31159765..31159789 (25 bp)
ATGCTTAATCTGTAGTAGGTATCTT
LOC_Os03g54920
Os.10970.1.S1_at--554--6931Chr03:31159751..31159775 (25 bp)
GTAGGTATCTTTTATGACAGGTGGT
LOC_Os03g54920
Os.10970.1.S1_at--764--671Chr03:31159738..31159762 (25 bp)
ATGACAGGTGGTTAGCAGCCCAACT
LOC_Os03g54920
Os.10970.1.S1_at--16--1031Chr03:31159733..31159757 (25 bp)
AGGTGGTTAGCAGCCCAACTTAGAC
LOC_Os03g54920
Os.10970.1.S1_at--252--7891Chr03:31159729..31159753 (25 bp)
GGTTAGCAGCCCAACTTAGACAATG
LOC_Os03g54920
Os.10970.1.S1_at--698--5071Chr03:31159724..31159748 (25 bp)
GCAGCCCAACTTAGACAATGGATGA
LOC_Os03g54920
Os.10970.1.S1_at--557--3351Chr03:31159668..31159692 (25 bp)
CACCCTGATGAATGAATTTACGTTT
LOC_Os03g54920
Os.10970.1.S1_at--98--9911Chr03:31159621..31159645 (25 bp)
TACTAATCACCTCGATATGCTGTTG
NONE
Target Sequence 
GACAGGTTACCTGCAAAACCAGCATATTATAACTATGTCTGTGCGATGTTACTACTGAATGGCATATCACTGTTTGGATG
TTTCCTTGTTGCAACTGGAGCTGGATTTGGTTTATGGTTGTACAATCTCACCAGTGTATGTTATCATTCTCTTTACCTTC
CACTTCTCTATGTGACTTTCCTAGCAGACTTTTTCCAGGAGGAAGATATGCTCCTAGAGAACGTCTACTACTCAGAGNAT
NGAAAGACGCNTGGGTTCTTTGATGCTGACTGGGANTTGATCTGCAGATACCACNGCCNTATGACCACTTTCATGTGAAT
TTGNCAGTCGTAGCTTTCATTTCTGGNAACTTNAATCTTAGATGGGAAAATTGTNATGTAAACAACCGTTATAATCAAAT
GAAATATGTAAATTGATATCGATATGCTTAATCTGTAGTAGGTATCTTTTATGACAGGTGGTTAGCAGCCCAACTTAGAC
AATGGATGAGGAAGGNTGTTTTTAACAACTACGNAACTNTCACCCTGATGAATGAATTTACGTTTCNGTAGCCTCGTAAA
AATTCCNTACTAATCACCTCGATATGCTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10970.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis