Browse Element(s) Details


OsAffx.13490.1.S1_at

Description tigr:9631.m05350
TID=OsAffx.13490.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein (having alternative splicing products)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5492011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54880Os.37742.1.S1_at6/113+31136383..31136978ATP-binding cassette sub-family B member 8, mitochondrial precursor, putative
LOC_Os03g54890Os.12202.1.S1_at11/113+31142265..3114434060S ribosomal protein L13a-2, putative, expressed
LOC_Os03g54890Os.47351.1.S1_at1/113+31142265..3114434060S ribosomal protein L13a-2, putative, expressed
LOC_Os03g54900Os.46774.1.S1_at11/113+31146033..31151362Leucine Rich Repeat family protein, expressed
LOC_Os03g54910Os.9502.1.S1_at10/113+31155353..31157769expressed protein
LOC_Os03g54920OsAffx.13490.1.S1_at11/113+31159621..31162675expressed protein
LOC_Os03g54920Os.10970.1.S1_at10/113+31159621..31162675expressed protein
LOC_Os03g54930OsAffx.3609.1.S1_at11/113+31164464..31170865Leo1
LOC_Os03g54930Os.36267.1.S1_s_at1/113+31164464..31170865Leo1
LOC_Os03g54950Os.28943.1.S1_x_at2/113+31175400..31178099retrotransposon protein, putative, unclassified
LOC_Os03g54960NANA3+31178916..31184684retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13490.1.S1_at--532--7891Chr03:31160473..31160497 (25 bp)
GGTTACAATTTACAGCACAGTTATG
LOC_Os03g54920
OsAffx.13490.1.S1_at--256--6631Chr03:31160439..31160463 (25 bp)
GTTGTGTGTTTGCTGTTCCATAATC
LOC_Os03g54920
OsAffx.13490.1.S1_at--796--10251Chr03:31160292..31160316 (25 bp)
TTTATGGTAAACACTAGCCCTTTTG
LOC_Os03g54920
OsAffx.13490.1.S1_at--323--1671Chr03:31160277..31160301 (25 bp)
AGCCCTTTTGTAGTATTTCAGTGTG
LOC_Os03g54920
OsAffx.13490.1.S1_at--725--10391Chr03:31160126..31160150 (25 bp)
TTTTCCAGGTACTAGGGTATCTTCT
LOC_Os03g54920
OsAffx.13490.1.S1_at--1048--7671Chr03:31160112..31160136 (25 bp)
GGGTATCTTCTGTTCTATCAACTTA
LOC_Os03g54920
OsAffx.13490.1.S1_at--368--9711Chr03:31160095..31160119 (25 bp)
TCAACTTATTACTACGCTGCTTTCT
LOC_Os03g54920
OsAffx.13490.1.S1_at--444--4891Chr03:31160077..31160101 (25 bp)
GCTTTCTTGATCTTGTACATTGGGA
LOC_Os03g54920
OsAffx.13490.1.S1_at--688--10831Chr03:31160058..31160082 (25 bp)
TTGGGATATTCTACGTACCCTCTTG
LOC_Os03g54920
OsAffx.13490.1.S1_at--464--4011Chr03:31160045..31160069 (25 bp)
CGTACCCTCTTGTTCTTATATAGCT
LOC_Os03g54920
OsAffx.13490.1.S1_at--656--2391Chr03:31160010..31160034 (25 bp)
AAAAATTGCTGGTTCATGTCTGAGT
LOC_Os03g54920
Target Sequence 
GGTTACAATTTACAGCACAGTTATGTTTGTTTAGGTTGTGTGTTTGCTGTTCCATAATCAGCATTTTTTATTATTTTGTT
GCAGCAAAACCAGCATATTATAACTATGTCTGTGCGATGTTACTACTGAATGGCATATCACTGTTTGGATGTTTCCTTGT
TGCAACTGGAGCTGGATTTGGTTTATGGTAAACACTAGCCCTTTTGTAGTATTTCAGTGTGATGCTAATTCAACATTTGA
GAGCATTATTTGAGCAAATATTTCTTGTTACAGGTTGTACAATCTCACCAGTGTATGTTATCATTCTCTTTACCTTCCAC
TTCTCTATGTGACTTTCCTAGCAGACTTTTTCCAGGTACTAGGGTATCTTCTGTTCTATCAACTTATTACTACGCTGCTT
TCTTGATCTTGTACATTGGGATATTCTACGTACCCTCTTGTTCTTATATAGCTTTTCTTCATCAAAAATTGCTGGTTCAT
GTCTGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13490.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis