Browse Element(s) Details


OsAffx.25714.1.S1_at

Description tigr:9631.m05341
TID=OsAffx.25714.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5485011/11expressed protein
LOC_Os03g5487011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54790Os.37742.1.S1_at11/113+31088889..31094229ABC transporter transmembrane region family protein, expressed
LOC_Os03g54804OsAffx.19542.3.S1_x_at6/113+31097020..31102797retrotransposon protein, putative, unclassified, expressed
LOC_Os03g54804OsAffx.13489.1.S1_at1/113+31097020..31102797retrotransposon protein, putative, unclassified, expressed
LOC_Os03g54820NANA3+31104635..31105630hypothetical protein
LOC_Os03g54830OsAffx.3607.1.S1_at11/113+31107498..31107959hypothetical protein
LOC_Os03g54840OsAffx.25713.1.S1_at11/113+31112335..31113841hypothetical protein
LOC_Os03g54850OsAffx.25714.1.S1_at11/113+31115593..31117971expressed protein
LOC_Os03g54850OsAffx.25714.2.S1_s_at1/113+31115593..31117971expressed protein
LOC_Os03g54860Os.47351.1.S1_at1/113+31127718..3112950260S ribosomal protein L13a-2, putative
LOC_Os03g54870OsAffx.25714.2.S1_s_at11/113+31130796..31133330expressed protein
LOC_Os03g54870OsAffx.25714.1.S1_at11/113+31130796..31133330expressed protein
LOC_Os03g54880Os.37742.1.S1_at6/113+31136383..31136978ATP-binding cassette sub-family B member 8, mitochondrial precursor, putative
LOC_Os03g54890Os.12202.1.S1_at11/113+31142265..3114434060S ribosomal protein L13a-2, putative, expressed
LOC_Os03g54890Os.47351.1.S1_at1/113+31142265..3114434060S ribosomal protein L13a-2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25714.1.S1_at--74--4733Chr03:31117052..31117076 (25 bp)
GCTGATGCAAAGGTTCGAGGCAAAC
LOC_Os03g54850
OsAffx.25714.1.S1_at--454--7892Chr03:31117063..31117087 (25 bp)
GGTTCGAGGCAAACTAGGTGAATTT
LOC_Os03g54850
OsAffx.25714.1.S1_at--284--10052Chr03:31117077..31117189 (25 bp)
TAGGTGAATTTACTTTCTTCCGAAG
LOC_Os03g54850
OsAffx.25714.1.S1_at--232--10332Chr03:31117180..31117202 (23 bp)
TTTCTTCCGAAGACCTTACTGCCAC
LOC_Os03g54850
OsAffx.25714.1.S1_at--114--1392Chr03:31117188..31117212 (25 bp)
AGACCTTACTGCCACGATTTTCTTA
LOC_Os03g54850
OsAffx.25714.1.S1_at--76--4412Chr03:31117198..31117222 (25 bp)
GCCACGATTTTCTTAGTTTTTGCTT
LOC_Os03g54850
OsAffx.25714.1.S1_at--789--5912Chr03:31117233..31117257 (25 bp)
GAGCTAGGCATATGGTCCTCAAGAA
LOC_Os03g54850
OsAffx.25714.1.S1_at--362--2352Chr03:31117347..31117368 (22 bp)
AAAGCAGAATGTTGATTCAGTCATT
LOC_Os03g54850
OsAffx.25714.1.S1_at--163--6572Chr03:31117357..31117381 (25 bp)
GATTCAGTCATTGATATCATCATGA
LOC_Os03g54850
OsAffx.25714.1.S1_at--466--6012Chr03:31117380..31117404 (25 bp)
GAGAGATTTCAGACCTTTGCTAAAA
LOC_Os03g54850
OsAffx.25714.1.S1_at--69--3432Chr03:31117389..31117413 (25 bp)
CAGACCTTTGCTAAAATTTTGTTGG
LOC_Os03g54850
Target Sequence 
GCTGATGCAAAGGTTCGAGGCAAACTAGGTGAATTTACTTTCTTCCGAAGACCTTACTGCCACGATTTTCTTAGTTTTTG
CTTACAAAATTTTGAGCTAGGCATATGGTCCTCAAGAAAAAAGCAGAATGTTGATTCAGTCATTGATATCATCATGAGAG
ATTTCAGACCTTTGCTAAAATTTTGTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25714.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis