Browse Element(s) Details


OsAffx.3607.1.S1_at

Description tigr:9631.m05339
TID=OsAffx.3607.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5483011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54780Os.18618.1.S1_at11/113+31078999..31087917Serine/threonine kinase, putative, expressed
LOC_Os03g54790Os.37742.1.S1_at11/113+31088889..31094229ABC transporter transmembrane region family protein, expressed
LOC_Os03g54804OsAffx.19542.3.S1_x_at6/113+31097020..31102797retrotransposon protein, putative, unclassified, expressed
LOC_Os03g54804OsAffx.13489.1.S1_at1/113+31097020..31102797retrotransposon protein, putative, unclassified, expressed
LOC_Os03g54820NANA3+31104635..31105630hypothetical protein
LOC_Os03g54830OsAffx.3607.1.S1_at11/113+31107498..31107959hypothetical protein
LOC_Os03g54840OsAffx.25713.1.S1_at11/113+31112335..31113841hypothetical protein
LOC_Os03g54850OsAffx.25714.1.S1_at11/113+31115593..31117971expressed protein
LOC_Os03g54850OsAffx.25714.2.S1_s_at1/113+31115593..31117971expressed protein
LOC_Os03g54860Os.47351.1.S1_at1/113+31127718..3112950260S ribosomal protein L13a-2, putative
LOC_Os03g54870OsAffx.25714.2.S1_s_at11/113+31130796..31133330expressed protein
LOC_Os03g54870OsAffx.25714.1.S1_at11/113+31130796..31133330expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3607.1.S1_at--781--492Chr03:31107538..31107562 (25 bp)
ATCGGGACGTGGGTGCGCTACCACC
LOC_Os03g54830
OsAffx.3607.1.S1_at--1020--7231Chr03:31107564..31107588 (25 bp)
GTCCCTTCCATCCATTGTTGGGTCA
LOC_Os03g54830
OsAffx.3607.1.S1_at--730--3271Chr03:31107589..31107613 (25 bp)
CAAACGGTCAAAAGGCGGTCGCCAG
LOC_Os03g54830
OsAffx.3607.1.S1_at--963--1411Chr03:31107612..31107636 (25 bp)
AGACACACGTCCATCTGTGAGCGGC
LOC_Os03g54830
OsAffx.3607.1.S1_at--1038--4531Chr03:31107641..31107665 (25 bp)
GCCCTGCCCTGTCGCATTAAATGCG
LOC_Os03g54830
OsAffx.3607.1.S1_at--356--3971Chr03:31107673..31107697 (25 bp)
CGGTTGGCGCGCTGCTCATGAATGC
LOC_Os03g54830
OsAffx.3607.1.S1_at--506--3831Chr03:31107684..31107708 (25 bp)
CTGCTCATGAATGCGCCTGGTAGAC
LOC_Os03g54830
OsAffx.3607.1.S1_at--211--3511Chr03:31107756..31107780 (25 bp)
CATGCTAGGGCCTCGGAGCGATCCA
LOC_Os03g54830
OsAffx.3607.1.S1_at--640--8331Chr03:31107836..31107860 (25 bp)
GGCTGCTCTCTTTCTGAGGGCGCGA
LOC_Os03g54830
OsAffx.3607.1.S1_at--428--7611Chr03:31107871..31107895 (25 bp)
GGGACTGGACCTACCGTACGTGCCA
LOC_Os03g54830
OsAffx.3607.1.S1_at--433--7271Chr03:31107890..31107914 (25 bp)
GTGCCACACAGGGAGGGCCTTCTTC
LOC_Os03g54830
Target Sequence 
ATCGGGACGTGGGTGCGCTACCACCCGTCCCTTCCATCCATTGTTGGGTCACAAACGGTCAAAAGGCGGTCGCCAGACAC
ACGTCCATCTGTGAGCGGCGCACGCCCTGCCCTGTCGCATTAAATGCGACGGGAGCGGTTGGCGCGCTGCTCATGAATGC
GCCTGGTAGACAGCGCATCCGCCCGCTCAGGCTCTCCACATGGCCACCACGTGGCAGCCATGCTAGGGCCTCGGAGCGAT
CCAGCCCCTCGGGCCTGAGGGGTGGCACGGGGCACCCCAAGCCGGGGGGAGGGGGGACGGCTGCTCTCTTTCTGAGGGCG
CGACCCATACATGGGGACTGGACCTACCGTACGTGCCACACAGGGAGGGCCTTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3607.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis