Browse Element(s) Details


Os.49335.1.S1_x_at

Description gb:AK106405.1
DB_XREF= gi:32991614
TID=Os.49335.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49335 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-H01, full insert sequence.
FL= gb:AK106405.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5477011/11Cleavage stimulation factor, 50 kDa subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54244NANA3+31059931..31063555retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g54750NANA3+31064096..31065916COBRA-like protein 4 precursor, putative, expressed
LOC_Os03g54760Os.14445.1.S1_at11/113+31069119..31072602Mitochondrial carrier protein, putative, expressed
LOC_Os03g54770Os.49335.1.S1_x_at11/113+31073418..31078660Cleavage stimulation factor, 50 kDa subunit, putative, expressed
LOC_Os03g54780Os.18618.1.S1_at11/113+31078999..31087917Serine/threonine kinase, putative, expressed
LOC_Os03g54790Os.37742.1.S1_at11/113+31088889..31094229ABC transporter transmembrane region family protein, expressed
LOC_Os03g54804OsAffx.19542.3.S1_x_at6/113+31097020..31102797retrotransposon protein, putative, unclassified, expressed
LOC_Os03g54804OsAffx.13489.1.S1_at1/113+31097020..31102797retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49335.1.S1_x_at--1136--2811Chr03:31077827..31077851 (25 bp)
AAGTTGGCTCTGGACGACTTGTCAA
LOC_Os03g54770
Os.49335.1.S1_x_at--141--3111Chr03:31077854..31077878 (25 bp)
AATATGTAGGCGCTGTTCACAGACA
LOC_Os03g54770
Os.49335.1.S1_x_at--696--2231Chr03:31077876..31078117 (25 bp)
ACAATTTCGATGTCAGGCTGTCTTC
LOC_Os03g54770
Os.49335.1.S1_x_at--326--9451Chr03:31078105..31078129 (25 bp)
TCAGGCTGTCTTCAACCAAACGGAG
LOC_Os03g54770
Os.49335.1.S1_x_at--1060--8631Chr03:31078270..31078294 (25 bp)
TGGGATGCACTTACCGCTGAAAATG
LOC_Os03g54770
Os.49335.1.S1_x_at--594--2291Chr03:31078290..31078314 (25 bp)
AAATGTAGCAAGGTTGCCCTCTGGC
LOC_Os03g54770
Os.49335.1.S1_x_at--1095--5411Chr03:31078354..31078378 (25 bp)
GAACCAGCCTTTGTTACATGCGGTA
LOC_Os03g54770
Os.49335.1.S1_x_at--1023--6731Chr03:31078493..31078517 (25 bp)
GTTCATGTGCTGTTCCTTAATTATT
LOC_Os03g54770
Os.49335.1.S1_x_at--86--3871Chr03:31078558..31078582 (25 bp)
CTGATGATACTGTACCCAACTTGGT
LOC_Os03g54770
Os.49335.1.S1_x_at--844--6611Chr03:31078601..31078625 (25 bp)
GTTGGCATTCATGTAAGCAGAATTC
LOC_Os03g54770
Os.49335.1.S1_x_at--637--2911Chr03:31078640..31078660 (21 bp)
AAGGATGTTCTTTTCCATTGTTGCC
LOC_Os03g54770
Target Sequence 
AAGTTGGCTCTGGACGACTTGTCAAGCAATATGTAGGCGCTGTTCACAGACAATTTCGATGTCAGGCTGTCTTCAACCAA
ACGGAGGAATTTGTAGTATCAACCGATGAACAAAACAGTGAGGTTGTCGTNTGGGATGCACTTACCGCTGAAAATGTAGC
AAGGTTGCCCTCTGGCCACACCGGTGCCCCGAGGTGGCTTGGCCACTCCCCTGCAGAACCAGCCTTTGTTACATGCGGTA
ACGATAGATCCGTCAGATTCTGGAAACAAACCGTGTAGAAAATGTAGATCCACCAACGAATCAACCCAGAAGTTGGTGGT
AGAATTAACTAATACATTGAGATTAAAAANCCTTGTTCATGTGCTGTTCCTTAATTATTTGATTAGTTGTACACTTGTAC
ATGCTACTGAAGTTGTACACTGATGATACTGTACCCAACTTGGTAGGAAAATTTTGGCTCTNGTTGGCATTCATGTAAGC
AGAATTCAGAACTTGAAAAGGATGTTCTTTTCCATTGTTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49335.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis