Browse Element(s) Details


Os.55487.1.S1_at

Description gb:AK108184.1
DB_XREF= gi:32993393
TID=Os.55487.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55487 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-B06, full insert sequence.
FL= gb:AK108184.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1485011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14820OsAffx.24260.1.S1_at11/112+8233527..8234627hypothetical protein
LOC_Os02g14830OsAffx.12041.1.S1_at11/112+8240993..8242952hypothetical protein
LOC_Os02g14840Os.33370.1.S1_at10/112+8244346..8248443Potassium channel KAT1, putative, expressed
LOC_Os02g14850Os.55487.1.S1_at11/112+8256455..8257567expressed protein
LOC_Os02g14860OsAffx.12042.1.S1_s_at11/112+8262557..8265722KE2 family protein, expressed
LOC_Os02g14860Os.16117.1.S1_s_at11/112+8262557..8265722KE2 family protein, expressed
LOC_Os02g14870OsAffx.12043.1.S1_at11/112+8268232..8270188hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55487.1.S1_at--203--10691Chr02:8256989..8257013 (25 bp)
TTGCCGTCCTCCTATCTAGGAAGGC
LOC_Os02g14850
Os.55487.1.S1_at--152--7671Chr02:8257021..8257045 (25 bp)
GGGATCGACAACGACCAGGTAATGA
LOC_Os02g14850
Os.55487.1.S1_at--188--1031Chr02:8257037..8257061 (25 bp)
AGGTAATGAGCTGCACTGGATGCCA
LOC_Os02g14850
Os.55487.1.S1_at--151--8551Chr02:8257053..8257077 (25 bp)
TGGATGCCAGCGACAGCGACCAGAT
LOC_Os02g14850
Os.55487.1.S1_at--327--9351Chr02:8257098..8257122 (25 bp)
TCGCTCTCTAACTGACGAGGTCACC
LOC_Os02g14850
Os.55487.1.S1_at--285--9271Chr02:8257154..8257178 (25 bp)
TCCCTGCCCAAGTCAACAACTTTGA
LOC_Os02g14850
Os.55487.1.S1_at--285--2531Chr02:8257171..8257195 (25 bp)
AACTTTGACCCCTCATTGGCGTGGC
LOC_Os02g14850
Os.55487.1.S1_at--216--8871Chr02:8257196..8257220 (25 bp)
TGATGACGCCCAGTGCTGCTGCTTC
LOC_Os02g14850
Os.55487.1.S1_at--71--9251Chr02:8257314..8257338 (25 bp)
TCCATTAGTGGCTAGGCCGTGGTCG
LOC_Os02g14850
Os.55487.1.S1_at--75--8431Chr02:8257367..8257391 (25 bp)
GGCCTTCGCCGTGCCGGGCAAAGAA
LOC_Os02g14850
Os.55487.1.S1_at--639--6951Chr02:8257496..8257520 (25 bp)
GTAGCACAGCTACGTATAGACAAAT
LOC_Os02g14850
Target Sequence 
TTGCCGTCCTCCTATCTAGGAAGGCCAGCGACGGGATCGACAACGACCAGGTAATGAGCTGCACTGGATGCCAGCGACAG
CGACCAGATCGACCCAAGCTCCTTCCGCCTCGCTCTCTAACTGACGAGGTCACCGCCACATGTCTTGACCTCCTCCTTCA
TGCCGTCCCTGCCCAAGTCAACAACTTTGACCCCTCATTGGCGTGGCTGATGACGCCCAGTGCTGCTGCTTCGAGACGCA
TTGGCGTCAGCGGTGCGGCGGCTGTGGGAGAACGAGGTTGAGCTCGACGCCACCCGTTGCCGCGCGGCCGAGCTGGAGGA
GCGGCTCCATTAGTGGCTAGGCCGTGGTCGGAGGGTTAGTGGCCATGGCGACCACCTTGGCCTTCGCCGTGCCGGGCAAA
GAAAGCAGAGTGAGAGGATACGGGAGAAAGAAGGAAGAAGACAAAAAAAAAAGGGATGGATGGAGAACGTGACGGCAGTG
GTATGGTTCTAATTTTGTAAAATTCCAGTAGCACAGCTACGTATAGACAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis