Browse Element(s) Details


Os.5549.1.S1_at

Description gb:AB028182.1
DB_XREF= gi:6730935
GEN=OsNAC3
TID=Os.5549.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5549 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for OsNAC3 protein, complete cds.
PROD=OsNAC3 protein
FL= gb:AK073667.1 gb:AB028182.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1234011/11NAC-domain containing protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12320Os.33741.1.S1_at11/117+6948238..6950229expressed protein
LOC_Os07g12320Os.33741.2.S1_at11/117+6948238..6950229expressed protein
LOC_Os07g12320Os.33741.2.S1_x_at10/117+6948238..6950229expressed protein
LOC_Os07g12330Os.44345.1.S1_at11/117+6951584..6954587Tryptophan/tyrosine permease family protein
LOC_Os07g12330Os.17442.1.S1_at1/117+6951584..6954587Tryptophan/tyrosine permease family protein
LOC_Os07g12340Os.5549.1.S1_at11/117+6966307..6967558NAC-domain containing protein 2, putative, expressed
LOC_Os07g12350NANA7+6992159..6995799retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009744biological_processresponse to sucrose stimulus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5549.1.S1_at--805--2151Chr07:6966975..6966999 (25 bp)
ACAGCGACGCGTTCCCGGAGATGGA
LOC_Os07g12340
Os.5549.1.S1_at--960--3951Chr07:6966990..6967014 (25 bp)
CGGAGATGGACTACTCGCTGCCGGC
LOC_Os07g12340
Os.5549.1.S1_at--378--3771Chr07:6967222..6967246 (25 bp)
CTCTGTGACTGCACCACTGTATATA
LOC_Os07g12340
Os.5549.1.S1_at--323--2251Chr07:6967246..6967270 (25 bp)
AAATTCAGAGTTTTCAGACATGTTC
LOC_Os07g12340
Os.5549.1.S1_at--976--2091Chr07:6967263..6967287 (25 bp)
ACATGTTCAGTATTCAGAGTTCTCA
LOC_Os07g12340
Os.5549.1.S1_at--49--10531Chr07:6967275..6967299 (25 bp)
TTCAGAGTTCTCAGGCAAGTTCAGA
LOC_Os07g12340
Os.5549.1.S1_at--779--991Chr07:6967315..6967339 (25 bp)
AGGATTAGTGGCTTATGAGCAGTAT
LOC_Os07g12340
Os.5549.1.S1_at--430--3451Chr07:6967334..6967358 (25 bp)
CAGTATGATATGCAGGTTAGTTTCT
LOC_Os07g12340
Os.5549.1.S1_at--192--7891Chr07:6967348..6967372 (25 bp)
GGTTAGTTTCTAGTTTAGCAGTGTT
LOC_Os07g12340
Os.5549.1.S1_at--1147--6811Chr07:6967360..6967384 (25 bp)
GTTTAGCAGTGTTACTCCAGATTGG
LOC_Os07g12340
Os.5549.1.S1_at--1091--2831Chr07:6967413..6967437 (25 bp)
AATGTAGTATACTGAGTGTTACTCA
LOC_Os07g12340
Target Sequence 
ACAGCGACGCGTTCCCGGAGATGGACTACTCGCTGCCGGCGGCGTCGTTCGACGACGCCCTGCTGCCCAAGGAGGAGGCG
CGCGACGACGACTGGCTCATGGGGATGAGCCTCGACGACCTCCAGGGCCTCGGCTCGCTGCTGCAGGCCGACGACCTCTC
CATGCTCGCGCCGCCGCCGGCGGCGAAGACGGAGCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTGTGACTGCACCACTGTATATAAATTCAGAGTTTTCAGACATGTTCAGTATTCAGAGTTCTCAGGCAAGT
TCAGAATTCAGAGATGGTTAAGGATTAGTGGCTTATGAGCAGTATGATATGCAGGTTAGTTTCTAGTTTAGCAGTGTTAC
TCCAGATTGGAGATTTGATTAATGATTTGATTCTAATTAATGTAGTATACTGAGTGTTACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis