Browse Element(s) Details


Os.44345.1.S1_at

Description gb:NM_186657.1
DB_XREF= gi:34900399
GEN=P0668C05.23
TID=Os.44345.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44345 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative tyrosine-specific transport protein (P0668C05.23), mRNA.
PROD=putative tyrosine-specific transport protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1233011/11Tryptophan/tyrosine permease family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12310OsAffx.28413.1.S1_at11/117+6935249..6937380hypothetical protein
LOC_Os07g12320Os.33741.1.S1_at11/117+6948238..6950229expressed protein
LOC_Os07g12320Os.33741.2.S1_at11/117+6948238..6950229expressed protein
LOC_Os07g12320Os.33741.2.S1_x_at10/117+6948238..6950229expressed protein
LOC_Os07g12330Os.44345.1.S1_at11/117+6951584..6954587Tryptophan/tyrosine permease family protein
LOC_Os07g12330Os.17442.1.S1_at1/117+6951584..6954587Tryptophan/tyrosine permease family protein
LOC_Os07g12340Os.5549.1.S1_at11/117+6966307..6967558NAC-domain containing protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0005279molecular_functionamino acid-polyamine transporter activity
GO:0005302molecular_functionL-tyrosine transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44345.1.S1_at--4--571Chr07:6954003..6954027 (25 bp)
ATCCTGCCTGCAATTCCGGTGACCG
LOC_Os07g12330
Os.44345.1.S1_at--169--9011Chr07:6954011..6954035 (25 bp)
TGCAATTCCGGTGACCGTCCTGACG
LOC_Os07g12330
Os.44345.1.S1_at--986--7751Chr07:6954020..6954044 (25 bp)
GGTGACCGTCCTGACGCTTGGGTTC
LOC_Os07g12330
Os.44345.1.S1_at--718--7251Chr07:6954027..6954051 (25 bp)
GTCCTGACGCTTGGGTTCCATGTCA
LOC_Os07g12330
Os.44345.1.S1_at--265--5791Chr07:6954032..6954056 (25 bp)
GACGCTTGGGTTCCATGTCATCACG
LOC_Os07g12330
Os.44345.1.S1_at--89--9691Chr07:6954052..6954076 (25 bp)
TCACGCCGTTCATCTGCAAGATTGT
LOC_Os07g12330
Os.44345.1.S1_at--364--131Chr07:6954082..6954106 (25 bp)
ATTCAGTGTACGATGCGCGGCGCGC
LOC_Os07g12330
Os.44345.1.S1_at--884--9631Chr07:6954084..6954108 (25 bp)
TCAGTGTACGATGCGCGGCGCGCAA
LOC_Os07g12330
Os.44345.1.S1_at--514--4591Chr07:6954103..6954127 (25 bp)
GCGCAATACTGATCGGCGGTGCCGT
LOC_Os07g12330
Os.44345.1.S1_at--191--9911Chr07:6954109..6954133 (25 bp)
TACTGATCGGCGGTGCCGTCCCATT
LOC_Os07g12330
Os.44345.1.S1_at--237--3971Chr07:6954119..6954143 (25 bp)
CGGTGCCGTCCCATTGGCCATGGTG
LOC_Os07g12330
Target Sequence 
ATCCTGCCTGCAATTCCGGTGACCGTCCTGACGCTTGGGTTCCATGTCATCACGCCGTTCATCTGCAAGATTGTGGGGGA
TTCAGTGTACGATGCGCGGCGCGCAATACTGATCGGCGGTGCCGTCCCATTGGCCATGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis