Browse Element(s) Details


OsAffx.28413.1.S1_at

Description tigr:9635.m01208
TID=OsAffx.28413.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1231011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12300OsAffx.16226.1.S1_at11/117+6918148..6918576hypothetical protein
LOC_Os07g12300OsAffx.27487.1.S1_at1/117+6918148..6918576hypothetical protein
LOC_Os07g12310OsAffx.28413.1.S1_at11/117+6935249..6937380hypothetical protein
LOC_Os07g12320Os.33741.1.S1_at11/117+6948238..6950229expressed protein
LOC_Os07g12320Os.33741.2.S1_at11/117+6948238..6950229expressed protein
LOC_Os07g12320Os.33741.2.S1_x_at10/117+6948238..6950229expressed protein
LOC_Os07g12330Os.44345.1.S1_at11/117+6951584..6954587Tryptophan/tyrosine permease family protein
LOC_Os07g12330Os.17442.1.S1_at1/117+6951584..6954587Tryptophan/tyrosine permease family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28413.1.S1_at--464--5111Chr07:6937326..6937350 (25 bp)
GCACTCTTGCGTGCAAGTGCTCAGA
LOC_Os07g12310
OsAffx.28413.1.S1_at--1023--4431Chr07:6937283..6937307 (25 bp)
GCCATATCTTTGTTCATCATCTCAG
LOC_Os07g12310
OsAffx.28413.1.S1_at--1028--2991Chr07:6937251..6937275 (25 bp)
AATGATGGTGTGCTTCTGAGAAATA
LOC_Os07g12310
OsAffx.28413.1.S1_at--397--5971Chr07:6937234..6937258 (25 bp)
GAGAAATATCCCAGCATTTGCAAGA
LOC_Os07g12310
OsAffx.28413.1.S1_at--234--151Chr07:6937209..6937233 (25 bp)
ATTACTCATTTGGTTCATCGCTCAG
LOC_Os07g12310
OsAffx.28413.1.S1_at--577--9351Chr07:6937192..6937216 (25 bp)
TCGCTCAGCGGCTGGGCTACAGGAA
LOC_Os07g12310
OsAffx.28413.1.S1_at--358--951Chr07:6937172..6937196 (25 bp)
AGGAAGCGGATTCACCTGACCACTG
LOC_Os07g12310
OsAffx.28413.1.S1_at--370--1711Chr07:6937154..6937178 (25 bp)
ACCACTGCTCTCAACCAAATTGTAG
LOC_Os07g12310
OsAffx.28413.1.S1_at--91--6151Chr07:6937119..6937143 (25 bp)
GAGGGTGTGCTCTTGATCCAATCAA
LOC_Os07g12310
OsAffx.28413.1.S1_at--131--1531Chr07:6937082..6937106 (25 bp)
AGCAGTTCATTTCCTCTTCAGATTT
LOC_Os07g12310
OsAffx.28413.1.S1_at--515--5351Chr07:6935282..6935306 (25 bp)
GAAGAACCTCGACTTAAATAGGGTG
LOC_Os07g12310
Target Sequence 
GCACTCTTGCGTGCAAGTGCTCAGAACCGGGGAAAATGGATGTGCCATATCTTTGTTCATCATCTCAGGGATGCAAATGA
TGGTGTGCTTCTGAGAAATATCCCAGCATTTGCAAGAATTACTCATTTGGTTCATCGCTCAGCGGCTGGGCTACAGGAAG
CGGATTCACCTGACCACTGCTCTCAACCAAATTGTAGAGCTGTAGTAGAGGGTGTGCTCTTGATCCAATCAAAAGGGATT
GGAGAGCAGTTCATTTCCTCTTCAGATTTTAATGGAAGGAAAAGACAATTTGTTTCAGTAAATTCAGAGATCCAAAATGA
AGCTTACATATATGAGATCTTAATAAGCNNNTGGAAGAACCTCGACTTAAATAGGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28413.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis