Browse Element(s) Details


Os.55529.1.S1_at

Description gb:AK108261.1
DB_XREF= gi:32993470
TID=Os.55529.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55529 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-B05, full insert sequence.
FL= gb:AK108261.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3364011/11CAPIP1, putative, expressed
LOC_Os06g336902/11CAPIP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33600Os.50135.1.S1_at11/116+19559075..19561849Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os06g33610Os.17491.1.S1_at1/116+19563325..19568252Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os06g33620OsAffx.15715.1.S1_x_at11/116+19575635..19576369hypothetical protein
LOC_Os06g33630Os.45974.1.A1_at1/116+19577862..19578161hypothetical protein
LOC_Os06g33640Os.55529.1.S1_at11/116+19582326..19584411CAPIP1, putative, expressed
LOC_Os06g33650OsAffx.27917.1.S1_at10/116+19585428..19588626hypothetical protein
LOC_Os06g33650OsAffx.1755.1.S1_x_at2/116+19585428..19588626hypothetical protein
LOC_Os06g33660OsAffx.27918.2.S1_at10/116+19592749..19594298hypothetical protein
LOC_Os06g33660OsAffx.27918.2.S1_x_at10/116+19592749..19594298hypothetical protein
LOC_Os06g33660OsAffx.27918.1.S1_x_at1/116+19592749..19594298hypothetical protein
LOC_Os06g33669NANA6+19596284..19596641NA
LOC_Os06g33680OsAffx.27919.1.S1_at11/116+19598280..19602399hypothetical protein
LOC_Os06g33690Os.55529.1.S1_at2/116+19603065..19605119CAPIP1, putative, expressed
LOC_Os06g33700OsAffx.27920.1.S1_at11/116+19609357..19609802hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55529.1.S1_at--680--2352Chr06:19604020..19604044 (25 bp)
AAAGCGGGCTTCCAGCCACAAGGAG
LOC_Os06g33690
Os.55529.1.S1_at--595--4372Chr06:19604005..19604029 (25 bp)
CCACAAGGAGCACTGAGAGGTTAGA
LOC_Os06g33690
Os.55529.1.S1_at--560--9811Chr06:19583180..19583204 (25 bp)
TAACGAACATATCCTCAAAGTCAAG
LOC_Os06g33640
Os.55529.1.S1_at--1061--7611Chr06:19582655..19582679 (25 bp)
GGGAACACCAAAGACGACATATGCT
LOC_Os06g33640
Os.55529.1.S1_at--767--3031Chr06:19582562..19582586 (25 bp)
AATCCTTGATCTCACTCTGCTTTCT
LOC_Os06g33640
Os.55529.1.S1_at--147--3331Chr06:19582550..19582574 (25 bp)
CACTCTGCTTTCTTGGTTGATTGAT
LOC_Os06g33640
Os.55529.1.S1_at--364--3431Chr06:19582468..19582492 (25 bp)
CAGAGCTTCTTGATCGACATTGCAT
LOC_Os06g33640
Os.55529.1.S1_at--135--5691Chr06:19582453..19582477 (25 bp)
GACATTGCATACTAAAGCTTGTTCT
LOC_Os06g33640
Os.55529.1.S1_at--800--5191Chr06:19582416..19582440 (25 bp)
GCAATTAAGGCACTCACTTCAGTTT
LOC_Os06g33640
Os.55529.1.S1_at--76--791Chr06:19582380..19582404 (25 bp)
ATGTGCAACTTTGTTACTTCGCTCG
LOC_Os06g33640
Os.55529.1.S1_at--180--2051Chr06:19582373..19582397 (25 bp)
ACTTTGTTACTTCGCTCGTGCAAAA
LOC_Os06g33640
Target Sequence 
AAAGCGGGCTTCCAGCCACAAGGAGCACTGAGAGGTTAGAGTTGCTTGATGATAACGAACATATCCTCAAAGTCAAGTTT
ATTGGGGGCGATCATATGTTGAAGAATTACTCATCCATCCTAACCATCCACTCTGAGGTCATCGATGGCCAACTTGGAAC
ATTGGTGGTCGAATCATTTGTAGTGGATATTCCAGATGGGAACACCAAAGACGACATATGCTATTTCATCGAGAACGTTC
TCAGGTGCAACCTTATGACCCTTGCTGATGTGTCAGAGGAGCGCCTTGCCAATCCTTGATCTCACTCTGCTTTCTTGGTT
GATTGATGATCAGAATAATCCATATATAAAATTGGTGGACCTTATTGAAACTCTCAGAAAACATCAGAGCTTCTTGATCG
ACATTGCATACTAAAGCTTGTTCTATAGAATTTAGAGCAATTAAGGCACTCACTTCAGTTTACTACAAACATATGTGCAA
CTTTGTTACTTCGCTCGTGCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55529.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis