Browse Element(s) Details


Os.55539.1.S1_at

Description gb:AK108283.1
DB_XREF= gi:32993492
TID=Os.55539.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55539 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-D03, full insert sequence.
FL= gb:AK108283.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5369011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53650Os.7102.1.S1_at11/113+30710412..30714085Cysteine synthase, putative, expressed
LOC_Os03g53660Os.46743.3.S1_a_at11/113+30714994..30724355myosin family protein, putative, expressed
LOC_Os03g53670Os.9822.2.S1_a_at11/113+30728128..30732240YT521-B-like family protein, expressed
LOC_Os03g53680NANA3+30738028..30738258hypothetical protein
LOC_Os03g53690Os.55539.1.S1_at11/113+30738832..30739853NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g53700Os.14952.1.A1_at9/113+30742024..30747217PHD-finger family protein, expressed
LOC_Os03g53710Os.52647.1.S1_at11/113+30746891..30748683Aldose 1-epimerase family protein, expressed
LOC_Os03g53720Os.26432.1.S1_at11/113+30753769..30757824protein kinase family protein, putative, expressed
LOC_Os03g53730Os.56988.1.S1_at11/113+30758057..30759117flavodoxin family protein, expressed
LOC_Os03g53740Os.49691.1.S1_at11/113+30759437..30760399expressed protein
LOC_Os03g53750Os.10141.1.S1_at11/113+30760719..30765124Narf, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0004316molecular_function3-oxoacyl-[acyl-carrier protein] reductase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55539.1.S1_at--173--1871Chr03:30739299..30739323 (25 bp)
ACGAGCGAGGCAGCGTACGACGCCA
LOC_Os03g53690
Os.55539.1.S1_at--839--6971Chr03:30739313..30739337 (25 bp)
GTACGACGCCATGTTCGGCGTGAAC
LOC_Os03g53690
Os.55539.1.S1_at--872--3971Chr03:30739477..30739501 (25 bp)
CGGTGGAGGTGATGACCAAGATCCT
LOC_Os03g53690
Os.55539.1.S1_at--1072--4051Chr03:30739567..30739591 (25 bp)
CGATGATGTACACCGGCAAGACAGA
LOC_Os03g53690
Os.55539.1.S1_at--763--751Chr03:30739572..30739596 (25 bp)
ATGTACACCGGCAAGACAGAGGAGG
LOC_Os03g53690
Os.55539.1.S1_at--210--951Chr03:30739594..30739618 (25 bp)
AGGACATGGCGCGGTACATCGCCGA
LOC_Os03g53690
Os.55539.1.S1_at--818--8351Chr03:30739689..30739713 (25 bp)
GGCGGCTGGATCAACGCCCAGGTCA
LOC_Os03g53690
Os.55539.1.S1_at--569--2571Chr03:30739722..30739746 (25 bp)
AACGGCGGCACTATCTAGCTACCCT
LOC_Os03g53690
Os.55539.1.S1_at--297--8231Chr03:30739728..30739752 (25 bp)
GGCACTATCTAGCTACCCTGGCCTG
LOC_Os03g53690
Os.55539.1.S1_at--451--8431Chr03:30739747..30739771 (25 bp)
GGCCTGCGCGCCAAAATAAATGATT
LOC_Os03g53690
Os.55539.1.S1_at--90--332Chr03:30739762..30739786 (25 bp)
ATAAATGATTTCTCCGTTCTAAAAT
LOC_Os03g53690
Target Sequence 
ACGAGCGAGGCAGCGTACGACGCCATGTTCGGCGTGAACGCGCGCGGCACCTTCCTGTGCTGCCGCGAGGCCGCGAACCG
GCTGGCGCGCGGCGGCCGGGGGCGCATCGTGACGTTCTCGTCGTCGGGCGTCGGGTCGCTCCGGCCGGGGTACGCGGCGT
ACGCGGCGAGCAAGGCGGCGGTGGAGGTGATGACCAAGATCCTGGCGCGCGAGCTGCGCGGCACGGGGATCACGGCGAAC
GCAGTGGCGCCCGGGTCCACGGGCACGCCGATGATGTACACCGGCAAGACAGAGGAGGACATGGCGCGGTACATCGCCGA
GGCGCCGCTGGGCCGCCTCGGCATGCCCGACGACATCGCGCCGCTCGTCGGCTTCCTCGCCAGCGACGCCGGCGGCTGGA
TCAACGCCCAGGTCATCCGCTGCAACGGCGGCACTATCTAGCTACCCTGGCCTGCGCGCCAAAATAAATGATTTCTCCGT
TCTAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55539.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis