Browse Element(s) Details


Os.56988.1.S1_at

Description gb:AK110695.1
DB_XREF= gi:32995904
TID=Os.56988.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56988 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-A09, full insert sequence.
FL= gb:AK110695.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5373011/11flavodoxin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53680NANA3+30738028..30738258hypothetical protein
LOC_Os03g53690Os.55539.1.S1_at11/113+30738832..30739853NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g53700Os.14952.1.A1_at9/113+30742024..30747217PHD-finger family protein, expressed
LOC_Os03g53710Os.52647.1.S1_at11/113+30746891..30748683Aldose 1-epimerase family protein, expressed
LOC_Os03g53720Os.26432.1.S1_at11/113+30753769..30757824protein kinase family protein, putative, expressed
LOC_Os03g53730Os.56988.1.S1_at11/113+30758057..30759117flavodoxin family protein, expressed
LOC_Os03g53740Os.49691.1.S1_at11/113+30759437..30760399expressed protein
LOC_Os03g53750Os.10141.1.S1_at11/113+30760719..30765124Narf, putative, expressed
LOC_Os03g53760OsAffx.25706.1.S1_x_at11/113+30766042..30772826Helicase associated domain family protein, expressed
LOC_Os03g53760Os.47539.1.S1_at11/113+30766042..30772826Helicase associated domain family protein, expressed
LOC_Os03g53760Os.47539.1.S1_s_at11/113+30766042..30772826Helicase associated domain family protein, expressed
LOC_Os03g53770Os.48104.1.A1_s_at11/113+30775598..30779649RNA recognition motif family protein, expressed
LOC_Os03g53770Os.8890.1.S1_at11/113+30775598..30779649RNA recognition motif family protein, expressed
LOC_Os03g53780Os.27256.1.A1_at6/113+30780849..30782343ammonium transporter AMT2.1, putative

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009733biological_processresponse to auxin stimulus
GO:0010181molecular_functionFMN binding
GO:0016655molecular_functionoxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56988.1.S1_at--78--6331Chr03:30758433..30758457 (25 bp)
GATGCTGTTCGTGCCGATCGGGTAC
LOC_Os03g53730
Os.56988.1.S1_at--558--1171Chr03:30758278..30758302 (25 bp)
AGTACATGGCCACACTTGTCAAGAA
LOC_Os03g53730
Os.56988.1.S1_at--574--2971Chr03:30758253..30758277 (25 bp)
AATGGTGCACGGTGCCTCGTGATCC
LOC_Os03g53730
Os.56988.1.S1_at--1048--9411Chr03:30758237..30758261 (25 bp)
TCGTGATCCGAATGCTCTACCAAAT
LOC_Os03g53730
Os.56988.1.S1_at--168--4371Chr03:30758218..30758242 (25 bp)
CCAAATATGGAATCTCTCGATCGAG
LOC_Os03g53730
Os.56988.1.S1_at--314--6391Chr03:30758200..30758224 (25 bp)
GATCGAGAATCCTTGCAATTAGACT
LOC_Os03g53730
Os.56988.1.S1_at--24--1271Chr03:30758174..30758198 (25 bp)
AGATTTCAAGCCGATATCCTCCAGA
LOC_Os03g53730
Os.56988.1.S1_at--539--6511Chr03:30758162..30758186 (25 bp)
GATATCCTCCAGAAATTCAGTGGCA
LOC_Os03g53730
Os.56988.1.S1_at--252--7531Chr03:30758143..30758167 (25 bp)
GTGGCATTGTGCGAATTGTGACCTG
LOC_Os03g53730
Os.56988.1.S1_at--125--10831Chr03:30758128..30758152 (25 bp)
TTGTGACCTGACTATCTTGCATTGC
LOC_Os03g53730
Os.56988.1.S1_at--678--4471Chr03:30758100..30758124 (25 bp)
GCCTGTTCTAGCATGATCAGACCCA
LOC_Os03g53730
Target Sequence 
GATGCTGTTCGTGCCGATCGGGTACACCTTCGGGGAGGGGATGTTGGAGATGGGCGAGCTCCGCGGCGGGTCGCCGTACG
GCGCGGGCGTCTTCTCCGGCGACGGCTCCAGGCCGCCGTCCGAGCTCGAGCTGGCCCTCGCCGAGCACCACGGCAAGTAC
ATGGCCACACTTGTCAAGAAAATGGTGCACGGTGCCTCGTGATCCGAATGCTCTACCAAATATGGAATCTCTCGATCGAG
AATCCTTGCAATTAGACTGAGATTTCAAGCCGATATCCTCCAGAAATTCAGTGGCATTGTGCGAATTGTGACCTGACTAT
CTTGCATTGCCCTGCCTGTTCTAGCATGATCAGACCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56988.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis