Browse Element(s) Details


Os.48104.1.A1_s_at

Description gb:CR284984
DB_XREF= gi:44671550
DB_XREF=CR284984
CLONE=y855d02p3
TID=Os.48104.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.48104 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5377011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53720Os.26432.1.S1_at11/113+30753769..30757824protein kinase family protein, putative, expressed
LOC_Os03g53730Os.56988.1.S1_at11/113+30758057..30759117flavodoxin family protein, expressed
LOC_Os03g53740Os.49691.1.S1_at11/113+30759437..30760399expressed protein
LOC_Os03g53750Os.10141.1.S1_at11/113+30760719..30765124Narf, putative, expressed
LOC_Os03g53760OsAffx.25706.1.S1_x_at11/113+30766042..30772826Helicase associated domain family protein, expressed
LOC_Os03g53760Os.47539.1.S1_at11/113+30766042..30772826Helicase associated domain family protein, expressed
LOC_Os03g53760Os.47539.1.S1_s_at11/113+30766042..30772826Helicase associated domain family protein, expressed
LOC_Os03g53770Os.48104.1.A1_s_at11/113+30775598..30779649RNA recognition motif family protein, expressed
LOC_Os03g53770Os.8890.1.S1_at11/113+30775598..30779649RNA recognition motif family protein, expressed
LOC_Os03g53780Os.27256.1.A1_at6/113+30780849..30782343ammonium transporter AMT2.1, putative
LOC_Os03g53790Os.18244.1.S1_at11/113+30786058..30788548Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os03g53790OsAffx.24089.1.S1_x_at1/113+30786058..30788548Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os03g53800Os.9344.1.S1_x_at11/113+30802116..30807733Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os03g53800OsAffx.24089.1.S1_x_at1/113+30802116..30807733Glycosyl hydrolase family 3 N terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48104.1.A1_s_at--354--4351Chr03:30779458..30779482 (25 bp)
CCAGTGAGCCATGTCAGATTTGGTA
LOC_Os03g53770
Os.48104.1.A1_s_at--496--3671Chr03:30779529..30779553 (25 bp)
CTTTGTAGTGTCGATGTTAAATTGA
LOC_Os03g53770
Os.48104.1.A1_s_at--434--6931Chr03:30779533..30779557 (25 bp)
GTAGTGTCGATGTTAAATTGATTAT
LOC_Os03g53770
Os.48104.1.A1_s_at--160--291Chr03:30779556..30779580 (25 bp)
ATAGGTGATAGTGATATTCTGGGCC
LOC_Os03g53770
Os.48104.1.A1_s_at--515--7751Chr03:30779559..30779583 (25 bp)
GGTGATAGTGATATTCTGGGCCATA
LOC_Os03g53770
Os.48104.1.A1_s_at--56--6511Chr03:30779562..30779586 (25 bp)
GATAGTGATATTCTGGGCCATATGT
LOC_Os03g53770
Os.48104.1.A1_s_at--282--10071Chr03:30779564..30779588 (25 bp)
TAGTGATATTCTGGGCCATATGTTG
LOC_Os03g53770
Os.48104.1.A1_s_at--769--6511Chr03:30779568..30779592 (25 bp)
GATATTCTGGGCCATATGTTGTTGA
LOC_Os03g53770
Os.48104.1.A1_s_at--539--231Chr03:30779569..30779593 (25 bp)
ATATTCTGGGCCATATGTTGTTGAC
LOC_Os03g53770
Os.48104.1.A1_s_at--222--3971Chr03:30779595..30779619 (25 bp)
CGGTATGGATTATTGGTTATTGAAT
LOC_Os03g53770
Os.48104.1.A1_s_at--229--10411Chr03:30779604..30779628 (25 bp)
TTATTGGTTATTGAATGTCTATGCT
LOC_Os03g53770
Target Sequence 
CCAGTGAGCCATGTCAGATTTGGTACATAGAGGATNTCNATGTTTTTNGGAACTTNTAGANNCGCCATTNCTTTTCTTTG
TAGTGTCGATGTTAAATTGATTATAGGTGATAGTGATATTCTGGGCCATATGTTGTTGACNCGGTATGGATTATTGGTTA
TTGAATGTCTATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48104.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis