Browse Element(s) Details


Os.9344.1.S1_x_at

Description gb:AK065044.1
DB_XREF= gi:32975062
TID=Os.9344.1
CNT=133
FEA=FLmRNA
TIER=FL+Stack
STK=61
UG=Os.9344 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001H22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001H22, full insert sequence.
FL= gb:AK065044.1 gb:AK119203.1 gb:AK122100.1 gb:AK062147.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5380011/11Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53770Os.48104.1.A1_s_at11/113+30775598..30779649RNA recognition motif family protein, expressed
LOC_Os03g53770Os.8890.1.S1_at11/113+30775598..30779649RNA recognition motif family protein, expressed
LOC_Os03g53780Os.27256.1.A1_at6/113+30780849..30782343ammonium transporter AMT2.1, putative
LOC_Os03g53790Os.18244.1.S1_at11/113+30786058..30788548Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os03g53790OsAffx.24089.1.S1_x_at1/113+30786058..30788548Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os03g53800Os.9344.1.S1_x_at11/113+30802116..30807733Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os03g53800OsAffx.24089.1.S1_x_at1/113+30802116..30807733Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os03g53810OsAffx.22492.1.S1_at1/113+30810964..30817116retrotransposon protein, putative, unclassified
LOC_Os03g53810OsAffx.22492.1.S1_x_at1/113+30810964..30817116retrotransposon protein, putative, unclassified
LOC_Os03g53820Os.31312.5.S1_x_at5/113+30817744..30820999retrotransposon protein, putative, unclassified
LOC_Os03g53820Os.31312.2.S1_x_at4/113+30817744..30820999retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9344.1.S1_x_at--340--3851Chr03:30807158..30807182 (25 bp)
CTGAACCTGACGATCCCGGAGCCCG
LOC_Os03g53800
Os.9344.1.S1_x_at--721--4091Chr03:30807186..30807210 (25 bp)
CGACGGTGATCCAGACGGTGTGCAA
LOC_Os03g53800
Os.9344.1.S1_x_at--948--8851Chr03:30807192..30807216 (25 bp)
TGATCCAGACGGTGTGCAAGAGCAT
LOC_Os03g53800
Os.9344.1.S1_x_at--1131--571Chr03:30807194..30807218 (25 bp)
ATCCAGACGGTGTGCAAGAGCATCA
LOC_Os03g53800
Os.9344.1.S1_x_at--1111--1531Chr03:30807212..30807236 (25 bp)
AGCATCAAGTGCGTCGTGGTGCTCA
LOC_Os03g53800
Os.9344.1.S1_x_at--758--4011Chr03:30807223..30807247 (25 bp)
CGTCGTGGTGCTCATCTCCGGGCGG
LOC_Os03g53800
Os.9344.1.S1_x_at--670--1711Chr03:30807461..30807485 (25 bp)
ACCACGCAGGCGCACAGCAGCTGAT
LOC_Os03g53800
Os.9344.1.S1_x_at--138--1851Chr03:30807464..30807488 (25 bp)
ACGCAGGCGCACAGCAGCTGATGCG
LOC_Os03g53800
Os.9344.1.S1_x_at--740--5731Chr03:30807510..30807534 (25 bp)
GACGTTGGTTGGGACGTGACGCCGT
LOC_Os03g53800
Os.9344.1.S1_x_at--621--7611Chr03:30807605..30807629 (25 bp)
GGGAATGCAATAACGATGAGAGTGA
LOC_Os03g53800
Os.9344.1.S1_x_at--237--6271Chr03:30807632..30807656 (25 bp)
GATGTGCTCAATTCTTGAGGCTGTG
LOC_Os03g53800
Target Sequence 
CTGAACCTGACGATCCCGGAGCCCGGGCCGACGGTGATCCAGACGGTGTGCAAGAGCATCAAGTGCGTCGTGGTGCTCAT
CTCCGGGCGGCCGCTGGTGGTGGAGCCGTACATCGGCGGCATCGACGCGTTCGTGGCGGCGTGGCTGCCGGGGACGGAGG
GGCAGGGCGTGGCCGACGTGCTGTTCGGCGACTACGGGTTCACCGGGAAGCTGTCGCGGACGTGGTTCAAGTCCGTGGAC
CAGCTGCCGATGAACGTCGGCGACGCGCACTACGACCCGCTCTTCCCCTTCGGCTACGGCCTCACCACGCAGGCGCACAG
CAGCTGATGCGGCGGCGATGTCGGTGGAGAGTGACGTTGGTTGGGACGTGACGCCGTCGTGACGAGAGAGATGGCGATCA
TGTAGTACTACATACACATGNTGTTGGGGTGGATTTGTTTGTGGTGGGGGAATGCAATAACGATGAGAGTGAGTGATGTG
CTCAATTCTTGAGGCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9344.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis