Browse Element(s) Details


Os.47539.1.S1_s_at

Description gb:BX927843
DB_XREF= gi:41882285
DB_XREF=BX927843
CLONE=p701b03p3
TID=Os.47539.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.47539 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_178223.1 (A.thaliana) putative RNA helicase A (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5376011/11Helicase associated domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53700Os.14952.1.A1_at9/113+30742024..30747217PHD-finger family protein, expressed
LOC_Os03g53710Os.52647.1.S1_at11/113+30746891..30748683Aldose 1-epimerase family protein, expressed
LOC_Os03g53720Os.26432.1.S1_at11/113+30753769..30757824protein kinase family protein, putative, expressed
LOC_Os03g53730Os.56988.1.S1_at11/113+30758057..30759117flavodoxin family protein, expressed
LOC_Os03g53740Os.49691.1.S1_at11/113+30759437..30760399expressed protein
LOC_Os03g53750Os.10141.1.S1_at11/113+30760719..30765124Narf, putative, expressed
LOC_Os03g53760OsAffx.25706.1.S1_x_at11/113+30766042..30772826Helicase associated domain family protein, expressed
LOC_Os03g53760Os.47539.1.S1_at11/113+30766042..30772826Helicase associated domain family protein, expressed
LOC_Os03g53760Os.47539.1.S1_s_at11/113+30766042..30772826Helicase associated domain family protein, expressed
LOC_Os03g53770Os.48104.1.A1_s_at11/113+30775598..30779649RNA recognition motif family protein, expressed
LOC_Os03g53770Os.8890.1.S1_at11/113+30775598..30779649RNA recognition motif family protein, expressed
LOC_Os03g53780Os.27256.1.A1_at6/113+30780849..30782343ammonium transporter AMT2.1, putative
LOC_Os03g53790Os.18244.1.S1_at11/113+30786058..30788548Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os03g53790OsAffx.24089.1.S1_x_at1/113+30786058..30788548Glycosyl hydrolase family 3 N terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47539.1.S1_s_at--1152--5831Chr03:30766562..30766586 (25 bp)
GACCAACGAGTTCAGGGCCATAGTG
LOC_Os03g53760
Os.47539.1.S1_s_at--474--4331Chr03:30766545..30766569 (25 bp)
CCATAGTGGAGTTCAAAGGGATGCA
LOC_Os03g53760
Os.47539.1.S1_s_at--811--7651Chr03:30766528..30766552 (25 bp)
GGGATGCAGTTTGCCGGGAAACCCA
LOC_Os03g53760
Os.47539.1.S1_s_at--283--4951Chr03:30766523..30766547 (25 bp)
GCAGTTTGCCGGGAAACCCAAGAGG
LOC_Os03g53760
Os.47539.1.S1_s_at--402--4731Chr03:30766460..30766484 (25 bp)
GCTGGGATGGCTGACACAGACCTCA
LOC_Os03g53760
Os.47539.1.S1_s_at--430--6231Chr03:30766417..30766441 (25 bp)
GATGGCGATGATTCCCCTCTTGACC
LOC_Os03g53760
Os.47539.1.S1_s_at--427--91Chr03:30766407..30766431 (25 bp)
ATTCCCCTCTTGACCTGACGGATAA
LOC_Os03g53760
Os.47539.1.S1_s_at--464--10751Chr03:30766398..30766422 (25 bp)
TTGACCTGACGGATAACATGCTGAA
LOC_Os03g53760
Os.47539.1.S1_s_at--1092--2491Chr03:30766384..30766408 (25 bp)
AACATGCTGAAGTTGCTCAGTAGAC
LOC_Os03g53760
Os.47539.1.S1_s_at--1005--2811Chr03:30766375..30766399 (25 bp)
AAGTTGCTCAGTAGACCGAGGCGGC
LOC_Os03g53760
Os.47539.1.S1_s_at--1014--8351Chr03:30766353..30766377 (25 bp)
GGCGGTCCAGAAACAATTCCAGGAA
LOC_Os03g53760
Target Sequence 
GACCAACGAGTTCAGGGCCATAGTGGAGTTCAAAGGGATGCAGTTTGCCGGGAAACCCAAGAGGAACAAGCAGCTCGCCG
AGAGGGACNCCGCCATTGAAGCGCTGGGATGGCTGACACAGACCTCAGGNACAAAGCTTCAGGATGATGGCGATGATTCC
CCTCTTGACCTGACGGATAACATGCTGAAGTTGCTCAGTAGACCGAGGCGGCGGTCCAGAAACAATTCCAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47539.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis