Browse Element(s) Details


OsAffx.25706.1.S1_x_at

Description tigr:9631.m05276
TID=OsAffx.25706.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative helicase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5376011/11Helicase associated domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53700Os.14952.1.A1_at9/113+30742024..30747217PHD-finger family protein, expressed
LOC_Os03g53710Os.52647.1.S1_at11/113+30746891..30748683Aldose 1-epimerase family protein, expressed
LOC_Os03g53720Os.26432.1.S1_at11/113+30753769..30757824protein kinase family protein, putative, expressed
LOC_Os03g53730Os.56988.1.S1_at11/113+30758057..30759117flavodoxin family protein, expressed
LOC_Os03g53740Os.49691.1.S1_at11/113+30759437..30760399expressed protein
LOC_Os03g53750Os.10141.1.S1_at11/113+30760719..30765124Narf, putative, expressed
LOC_Os03g53760OsAffx.25706.1.S1_x_at11/113+30766042..30772826Helicase associated domain family protein, expressed
LOC_Os03g53760Os.47539.1.S1_at11/113+30766042..30772826Helicase associated domain family protein, expressed
LOC_Os03g53760Os.47539.1.S1_s_at11/113+30766042..30772826Helicase associated domain family protein, expressed
LOC_Os03g53770Os.48104.1.A1_s_at11/113+30775598..30779649RNA recognition motif family protein, expressed
LOC_Os03g53770Os.8890.1.S1_at11/113+30775598..30779649RNA recognition motif family protein, expressed
LOC_Os03g53780Os.27256.1.A1_at6/113+30780849..30782343ammonium transporter AMT2.1, putative
LOC_Os03g53790Os.18244.1.S1_at11/113+30786058..30788548Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os03g53790OsAffx.24089.1.S1_x_at1/113+30786058..30788548Glycosyl hydrolase family 3 N terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25706.1.S1_x_at--852--10331Chr03:30767318..30767342 (25 bp)
TTTATGGATCCTAGCCTGTGTGAAT
LOC_Os03g53760
OsAffx.25706.1.S1_x_at--731--10411Chr03:30766768..30766792 (25 bp)
TTATATGCCGCACAAGAGCTCGCTG
LOC_Os03g53760
OsAffx.25706.1.S1_x_at--1093--10231Chr03:30766714..30766738 (25 bp)
TTTGGCCGCGAGACGAGCAGAGCAA
LOC_Os03g53760
OsAffx.25706.1.S1_x_at--777--5951Chr03:30766695..30766719 (25 bp)
GAGCAAGGCTCAGCAGCAGCGACGA
LOC_Os03g53760
OsAffx.25706.1.S1_x_at--1087--8111Chr03:30766649..30766673 (25 bp)
GGACGGAATGAACCCCAAGAGCCTG
LOC_Os03g53760
OsAffx.25706.1.S1_x_at--1153--5831Chr03:30766562..30766586 (25 bp)
GACCAACGAGTTCAGGGCCATAGTG
LOC_Os03g53760
OsAffx.25706.1.S1_x_at--812--7651Chr03:30766528..30766552 (25 bp)
GGGATGCAGTTTGCCGGGAAACCCA
LOC_Os03g53760
OsAffx.25706.1.S1_x_at--403--4731Chr03:30766460..30766484 (25 bp)
GCTGGGATGGCTGACACAGACCTCA
LOC_Os03g53760
OsAffx.25706.1.S1_x_at--600--2131Chr03:30766445..30766469 (25 bp)
ACAGACCTCAGGGACAAAGCTTCAG
LOC_Os03g53760
OsAffx.25706.1.S1_x_at--290--711Chr03:30766419..30766443 (25 bp)
ATGATGGCGATGATTCCCCTCTTGA
LOC_Os03g53760
OsAffx.25706.1.S1_x_at--213--3631Chr03:30766399..30766423 (25 bp)
CTTGACCTGACGGATAACATGCTGA
LOC_Os03g53760
Target Sequence 
TTTATGGATCCTAGCCTGTGTGAATGCTACTTGCAACTTAAAGAAGAGCTTGATAAACTTGTACAGAAGAAGCTTGAAGA
CCCCAGCTTCGACATCCACAAGGAAGGAAAGTACATCTTATATGCCGCACAAGAGCTCGCTGCAGGCGACCTATGCGAAG
GAAGGTTTGTGTTTGGCCGCGAGACGAGCAGAGCAAGGCTCAGCAGCAGCGACGACACCAAAGGCAACATTATCAAGGAC
GGAATGAACCCCAAGAGCCTGCTCCAGACCCTGCTGATGAGGGCCGGCCACACCCCTCCCAAGTACAAGACAAAGCACCT
CAAGACCAACGAGTTCAGGGCCATAGTGGAGTTCAAAGGGATGCAGTTTGCCGGGAAACCCAAGAGGAACAAGCAGCTCG
CCGAGAGGGACGCCGCCATTGAAGCGCTGGGATGGCTGACACAGACCTCAGGGACAAAGCTTCAGGATGATGGCGATGAT
TCCCCTCTTGACCTGACGGATAACATGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25706.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis