Browse Element(s) Details


Os.55625.1.S1_at

Description gb:AK108439.1
DB_XREF= gi:32993648
TID=Os.55625.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.55625 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-B09, full insert sequence.
FL= gb:AK108439.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3045411/11Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30390OsAffx.27083.1.S1_at11/115+17533724..17540517Glycosyl hydrolase family 1 protein
LOC_Os05g30400Os.10482.1.S1_at11/115+17540516..17542514expressed protein
LOC_Os05g30410Os.5533.1.S1_at9/115+17545795..17548104PHD finger-like domain protein 5A, putative, expressed
LOC_Os05g30420Os.55569.1.S1_at10/115+17550003..17552334expressed protein
LOC_Os05g30430Os.9888.1.S1_at11/115+17556799..17560313expressed protein
LOC_Os05g30440OsAffx.27084.1.S1_at11/115+17560522..17561175hypothetical protein
LOC_Os05g30454Os.55625.1.S1_at11/115+17563862..17568673Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os05g30454OsAffx.24949.2.S1_at4/115+17563862..17568673Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os05g30454OsAffx.9087.1.S1_at2/115+17563862..17568673Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os05g30470OsAffx.27085.1.S1_at9/115+17574963..17575793hypothetical protein
LOC_Os05g30480Os.54759.1.S1_at1/115+17578611..17580620Luminal binding protein 4 precursor, putative, expressed
LOC_Os05g30490NANA5+17583469..17584251Harpin-induced protein 1 containing protein
LOC_Os05g30500OsAffx.14888.1.S1_at11/115+17589788..17590596expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006772biological_processthiamin metabolism
GO:0004788molecular_functionthiamin diphosphokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55625.1.S1_at--1085--2391Chr05:17564509..17564533 (25 bp)
AAACATCAACGTACTTCATCTCTTC
LOC_Os05g30454
Os.55625.1.S1_at--569--1991Chr05:17564467..17564491 (25 bp)
ACTCCTATCGGATGATTGCTTGATC
LOC_Os05g30454
Os.55625.1.S1_at--33--1971Chr05:17564381..17564405 (25 bp)
ACTGTGGATTGATTCCCATCGGCGC
LOC_Os05g30454
Os.55625.1.S1_at--377--1711Chr05:17564343..17564367 (25 bp)
ACCACAACCACTGGGCTTCAATGGA
LOC_Os05g30454
Os.55625.1.S1_at--70--3411Chr05:17564232..17564256 (25 bp)
CAGCATGAGCTTTGGTGGACTTATT
LOC_Os05g30454
Os.55625.1.S1_at--478--6091Chr05:17564181..17564205 (25 bp)
GAGTACTGTTGTTACGATCACTTCA
LOC_Os05g30454
Os.55625.1.S1_at--1091--211Chr05:17564144..17564168 (25 bp)
ATTTGGACAATATCGCTCCGGCACC
LOC_Os05g30454
Os.55625.1.S1_at--633--4251Chr05:17564127..17564151 (25 bp)
CCGGCACCACTCTTGAAATACGTAA
LOC_Os05g30454
Os.55625.1.S1_at--44--10811Chr05:17564078..17564102 (25 bp)
TTGTCTCATCTATTTTACGTCGTTG
LOC_Os05g30454
Os.55625.1.S1_at--614--8271Chr05:17564018..17564042 (25 bp)
GGCATCTGATGTGGCTAAACCTGGT
LOC_Os05g30454
Os.55625.1.S1_at--372--6171Chr05:17563972..17563996 (25 bp)
GAGGACTTGGCACGTCTCTAAATAT
LOC_Os05g30454
Target Sequence 
AAACATCAACGTACTTCATCTCTTCCCAAACAACAGGATCATACTCCTATCGGATGATTGCTTGATCTTTCTGCTGCCAA
GAACACACACTCATAACATCCATATTGAACGGTCTATTGAGGGGCCCCACTGTGGATTGATTCCCATCGGCGCGCCTTCG
GCCACCACCACAACCACTGGGCTTCAATGGAATTTAGATAATACCAGCATGAGCTTTGGTGGACTTATTAGCACATCAAA
CATTGTGAGAGAGGAGAGTACTGTTGTTACGATCACTTCAGATTCTGACCTGATTTGGACAATATCGCTCCGGCACCACT
CTTGAAATACGTAACACAATTGTATCATAGTTCCAATTTTGTCTCATCTATTTTACGTCGTTGAGTTNTACCCTTAGTAG
AAGAGTGAAAACATACATGGCATCTGATGTGGCTAAACCTGGTGAAATGTTAATATGTANCTTAGAGGACTTGGCACGTC
TCTAAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis