Browse Element(s) Details


Os.55651.1.S1_at

Description gb:AK108491.1
DB_XREF= gi:32993700
TID=Os.55651.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55651 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-G02, full insert sequence.
FL= gb:AK108491.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1145011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11430Os.16961.1.S1_at11/116+6031432..6034427GRAM domain-containing protein, putative, expressed
LOC_Os06g11430OsAffx.27566.1.S1_at4/116+6031432..6034427GRAM domain-containing protein, putative, expressed
LOC_Os06g11440Os.7473.1.S1_at11/116+6035702..6049763transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g11440Os.49361.1.S1_at11/116+6035702..6049763transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g11450Os.55651.1.S1_at11/116+6057842..6059542Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g11460NANA6+6065748..6070866retrotransposon protein, putative, unclassified
LOC_Os06g11470NANA6+6073936..6074916hypothetical protein
LOC_Os06g11480OsAffx.22608.4.A1_at11/116+6080890..6082448hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0010200biological_processresponse to chitin
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55651.1.S1_at--854--1851Chr06:6058361..6058385 (25 bp)
ACGACGCCAACGTCAACGGCGAGGA
LOC_Os06g11450
Os.55651.1.S1_at--1030--1311Chr06:6058308..6058332 (25 bp)
AGATGGCTCCGTGAGCTCAGCCAAG
LOC_Os06g11450
Os.55651.1.S1_at--462--5951Chr06:6058233..6058257 (25 bp)
GAGCAACAGAGTCGTCGCCTTCGCC
LOC_Os06g11450
Os.55651.1.S1_at--266--3051Chr06:6058176..6058200 (25 bp)
AATCGCCCGGCAAGTTTGAGCTCGC
LOC_Os06g11450
Os.55651.1.S1_at--996--8391Chr06:6058136..6058160 (25 bp)
GGCGCCAGTGCATGCATCATCTGAT
LOC_Os06g11450
Os.55651.1.S1_at--1036--6431Chr06:6058114..6058138 (25 bp)
GATCAGAAAACCAATCCGCGGCGGC
LOC_Os06g11450
Os.55651.1.S1_at--1104--4331Chr06:6058073..6058097 (25 bp)
CCATGGCTGGACCTTCGATGAATCA
LOC_Os06g11450
Os.55651.1.S1_at--754--4051Chr06:6058058..6058082 (25 bp)
CGATGAATCAGCTCGTGCACGGACA
LOC_Os06g11450
Os.55651.1.S1_at--327--9031Chr06:6058043..6058067 (25 bp)
TGCACGGACACAGATCACTAGAAAA
LOC_Os06g11450
Os.55651.1.S1_at--673--10171Chr06:6057964..6057988 (25 bp)
TATACATTTTTCTCTCCATTGCTTC
LOC_Os06g11450
Os.55651.1.S1_at--788--6631Chr06:6057865..6057889 (25 bp)
GTTGTACTTGTACCGGCACTGTATT
LOC_Os06g11450
Target Sequence 
ACGACGCCAACGTCAACGGCGAGGACCAAGCGTGACAAGACGGCCGCCGCCGCAGATGGCTCCGTGAGCTCAGCCAAGGG
CAGCGTCCGCTTCGACTGTCTCGGCGGCGGCGGCGGCGGCGGCGGCCCGAGCAACAGAGTCGTCGCCTTCGCCAACGACG
ACGAGGAGGATGACGACGAGAAGCCAATCGCCCGGCAAGTTTGAGCTCGCGCCATGCGCGGTGGCGGCGCCAGTGCATGC
ATCATCTGATCAGAAAACCAATCCGCGGCGGCTTCTCGCAGCGATCCGCCATGGCTGGACCTTCGATGAATCAGCTCGTG
CACGGACACAGATCACTAGAAAAGATCATCAATTTGAGTTGAAAATACCACTCCTAAATTAGTACTAGATTGTTAATTAT
ACATTTTTCTCTCCATTGCTTCTTTGGATAGAGAAGTGGCGTGGAAACGTTCAAAGATCCAATTTTTCTTCCCCTCCGTT
GAAAAACTGGAGCGGGGTTGTACTTGTACCGGCACTGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55651.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis